Input parameters:

  Query = gi_186683992_ref_YP_001867188.1_ (Len=349)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683992_ref_YP_001867188.1_, Len=349):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVLAIETSCDETAVAIVNNRKVCSSIVTSQIPVHQQYGGVVPEVASRQHLETINVAIAQALEQAQLDWGQIDAIAATC 80  
WD40-rpts                          (___________________________________________________________

Query       81 APGLLGALLVGLTAAKTLAMVHNKPFLGVHHLEGHIYATYLSESSLNPPFLSLLVSGGHTSLIFVKDCGNYETLGQTRDD 160 
WD40-rpts      __WD 1____________________________________________________________)             

Query      161 AAGEAFDKVARLLKLGYPGGPVIDKLAQQGNPQAFALPEGKVSLPGGGFHRYDASFSGLKTAVLRLVQQLEKDGEQVPVA 240 
WD40-rpts                                                                                      

Query      241 DVAASFQETVARSLTKRAIACALDYGLDTIAIGGGVAANSGLRKNLQAAAVKHNLRVLFPPLKFCTDNAAMIGCAAADHL 320 
WD40-rpts                                                                                      

Query      321 SHGHTSPLTLGVESRLALTQVMKLYHPLE 349 
WD40-rpts                                   

1 WD40-repeats found in QUERY=gi_186683992_ref_YP_001867188.1_ (Len=349):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    21-147      3.02  239.27  0.03650       25.0%     29.16

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-147    NRKVCSSIVTSQIPVHQQYGGVVPEVASRQHLETINVAIAQALEQAQLDWGQIDAIAATCAPGLLGALLVGLTAAKTLAMVHNKPFLGVHHLEGHIYATYLSESSLNPPFLSLLVSGGHTSLIFVKD

   WD40 Template    TGECLRT---LS-----GHTSGVT--------------------------------SVSFSPD------------------------G-----------------------KRLVSGSEDGTIKVWD