Input parameters:

  Query = gi_186683837_ref_YP_001867033.1_ (Len=457)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683837_ref_YP_001867033.1_, Len=457):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRTEWVAKRRGQVNVSQMHYARQGVITEEMHYVAQRENLPTDLIRDEVARGRMIIPANINHTNLEPMAIGIASKCKVNAN 80  
WD40-rpts                                                                                      

Query       81 IGASPNSSNLQEEVDKLNLAVKYGADTVMDLSTGGGNLDEIRTAIIKASPVPIGTVPVYQALESVHGTIENLTADDFLHI 160 
WD40-rpts                             (________________________________________________________

Query      161 IEKHAQQGVDYQTIHAGILIEHLPLVRNRITGIVSRGGGILARWMLHHHKQNPLYTHFQDIIEIFKRYDVSFSLGDSLRP 240 
WD40-rpts      ________WD 1_______________________________________________________________)    

Query      241 GCTHDASDEAQLAELKTLGQLTRKAWEDDVQVMVEGPGHVPMDQIEFNVRKQMEECSEAPFYVLGPLVTDIAPGYDHITS 320 
WD40-rpts                                                                                      

Query      321 AIGAAMAGWYGTAMLCYVTPKEHLGLPNAEDVRNGLIAYKIAAHAADIARHRPGARDRDDELSKARYNFDWNRQFELSLD 400 
WD40-rpts                                                                                      

Query      401 PERAKEYHDETLPADIYKTAEFCSMCGPKFCPMQTKVDADALTELEKFLAKEPVTQS 457 
WD40-rpts                                                               

1 WD40-repeats found in QUERY=gi_186683837_ref_YP_001867033.1_ (Len=457):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   104-236      3.11  243.06  0.03252       20.0%      8.98

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  104-236    GADTVMDLSTGGGNLDEIRTAIIKASPVPIGTVPVYQALESVHGTIENLTADDFLHIIEKHAQQGVDYQTIHAGILIEHLPLVRNRITGIVSRGGGILARWMLHHHKQNPLYTHFQDIIEIFKRYDVSFSLGD

   WD40 Template    TGECLRTLSGHTSG---------------VTSV--------------SFS---------------------PDGKR-------------LVSGSE------------------------------DGTIKVWD