Input parameters:

  Query = gi_186683787_ref_YP_001866983.1_ (Len=440)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683787_ref_YP_001866983.1_, Len=440):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLKPLLLSGWFRAQPFLNYVVVVILIAPLLGASAHSFPVKSEVAKLTSKVGDSDSVSKEIAVVGEPEIAEISKTDQIDSL 80  
WD40-rpts                                                                                      

Query       81 TEKFDSVPTQSPAVQEPQVLPADKIESFAQADSYGLNNDLTVPDTLAAVELAPLTDVPVSQLNLVQKLKAANIKSLKGQE 160 
WD40-rpts                                                                                      

Query      161 KSLSREKSFTKSLTATQVAPTLRESQPTTATEIPVSEPRDESQAEQIDPIGSPHPIPWKWITATQEAIGSNGGSGVRHYR 240 
WD40-rpts                                                                                      

Query      241 SVPVVSPDGKYAVYSRVQLEVKPEMYNSRVTSVLFVQDMHTKKLWVMASTTPVSDPLLKVKALKGSSSEEANPNGQIGVL 320 
WD40-rpts                                                                     (________________

Query      321 VPVSWSEKGDRFLARKFEGIFNTGDSTDSAVIWDRQKNHANIVAPANEQDEHEKIAVLLGWSKKQPDHVLFRAGELGDEN 400 
WD40-rpts      _______WD 1______________________)                                              

Query      401 WPLMQVANDGKTVPTTDEDQPITFGKKVTEIWAGPQVAYR 440 
WD40-rpts                                              

1 WD40-repeats found in QUERY=gi_186683787_ref_YP_001866983.1_ (Len=440):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   304-354      3.27  249.73  0.02652       25.0%     10.37

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  304-354    KGSSSEEANPNGQIGVLVPVSWSEKGDRFLARKFEGIFNTGDSTDSAVIWD

   WD40 Template    TGECL--RTLSGHTSGVTSVSFSPDGKR---------LVSGSEDGTIKVWD