Input parameters:

  Query = gi_186683661_ref_YP_001866857.1_ (Len=429)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683661_ref_YP_001866857.1_, Len=429):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKFLDTAIEAIAAREILDSRGRPTIEAEVHLANGVVGLAQVPSGASTGSFEAHELRDGDKSRYGGKGVLKAVKNVKEAL 80  
WD40-rpts                                                                                      

Query       81 APKLLGLDALNQELLDRTMIAIDGSPNKSSLGANAILGVSLAAAKAGAESLDIPLYRYLGGPLANLLPVPLMNVINGGAH 160 
WD40-rpts                                                                                      

Query      161 ASNNVDFQEFMIVPIGATSFREALRWGAEVFATLSQVLDEKGLLTGVGDEGGFAPNLESNQVALELLVAAIKKAGYKPGE 240 
WD40-rpts                                                                               (______

Query      241 EVALALDVAASEFYKNGQYVYDGKPHAPAEFIDYLGQLVDQYPIVSIEDGLHEEDWQSWQLLTQKLGSQVQLVGDDLFVT 320 
WD40-rpts      ___________________WD 1_________________________)                               

Query      321 NATRLQRGIEEKAANAILIKLNQIGSLTETLETIDLATRNSIRSVISHRSGETEDTTIADLAVATRAGQIKTGSLCRSER 400 
WD40-rpts                                                                                      

Query      401 VAKYNRLLRIEDELGDRAVYAGAVGLGPK 429 
WD40-rpts                                   

1 WD40-repeats found in QUERY=gi_186683661_ref_YP_001866857.1_ (Len=429):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   234-289      2.83  231.40  0.04637       15.0%      0.78

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  234-289    AGYKPGEEVALALDVAASEFYKNGQYVYDGKPHAPAEFIDYLGQLVDQYPIVSIED

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG----------------TIKVWD