Input parameters:

  Query = gi_186683639_ref_YP_001866835.1_ (Len=359)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683639_ref_YP_001866835.1_, Len=359):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQQKRALITGITGQDGSYLSEFLLEQGYEVHGIIRRTSTFNTDRIDHIYEDPHKQGVRLFLHYGDLTDGTTLRRILEEV 80  
WD40-rpts                                                                                      

Query       81 KPVEIYNLGAQSHVRVSFDSPEYTVDAVGMGTLRLLEAIRDYQHRTGIQVRFYQAGSSEMYGLVQAIPQSETTPFYPRSP 160 
WD40-rpts                                                                                      

Query      161 YACAKVYAHWQTVNYRESYDLFACNGILFNHESPRRGETFVTRKITRAVAGIVAGKQKKIYMGNLDSKRDWGYAKDYVKA 240 
WD40-rpts                                                           (__________________________

Query      241 MWLMLQQDQPDDYVIATGETHSVREFLELAFSYVNLNWQDYVEFDERYLRPSEVDLLIGDATKARQNLGWKTSVTFKELV 320 
WD40-rpts      ____WD 1______________________________)                                         

Query      321 SLMVEADLQALGHTSPNGNGSQFPLDIATVRQELGALHF 359 
WD40-rpts                                             

1 WD40-repeats found in QUERY=gi_186683639_ref_YP_001866835.1_ (Len=359):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   214-279      3.02  239.34  0.03643       15.0%     -4.83

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  214-279    AGKQKKIYMGNLDSKRDWGYAKDYVKAMWLMLQQDQPDDYVIATGETHSVREFLELAFSYVNLNWQ

   WD40 Template    TGECLRTLSGHTSGVTSVSF---------------SPDGKRLVSGSEDG-----------TIKVWD