Input parameters:

  Query = gi_186683601_ref_YP_001866797.1_ (Len=1085)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683601_ref_YP_001866797.1_, Len=1085):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVNDTFKNENMEGIAVIGMAGRFPGAKSINDFWRNLKDGVESISVLTDEDILNSAIDPAILNNPRHVKAGAVLEDIELF 80  
WD40-rpts                                                                                      

Query       81 DAAFFGFNPREAAIMDPQHRFFLECSWQALEDAGYDSENFAGEIGIYGGMGWNSYLLFNIASNRNLLSLEIGQQTLLGNE 160 
WD40-rpts                                                                                      

Query      161 KDFLTTRTSYKLNLKGPSINVQTGCSTSLVSIYLACQSLLSYQCDMALAGGVSINVLQKAGYLHQEVGIMSPDGHCRTFD 240 
WD40-rpts                                                                                      

Query      241 AKARGTVGGSGVGVVVLKRLEDALSERDCIHAVIIGSAINNDGALKVGYTAPSLVRQAQAIAQALAVADIEAETVNYVEC 320 
WD40-rpts                                                                                      

Query      321 HGSGTVLGDPVEIKALTKAFRTSTQKKNFCAIGSVKTNVGHLDAAAGIAGFIKTVLALKHKLIPPSLHFEEPNPEIDFTN 400 
WD40-rpts                                                                                      

Query      401 SPFYVNTKLSEWKTNSTPRRAGVSSFGIGGTNAHIILEEAPIGEQGEQGRKYQLLVISAKTESALETATANLVNHLKQHP 480 
WD40-rpts                                                                                      

Query      481 NLNLADVAYTLKVGRRAMGYRRVVVCQDIDDAMNALQDPKRVLTSIQETSEYAAYTPSPADGLRDRDRPVALMFPGLGTH 560 
WD40-rpts                                                                                      

Query      561 HINMALEIYQVEPTFQEAVDRCCLLLKPILGLDLRDVLYPKNSSQKQNPSKPGLDLRKMLGRSEEPADEATQKLNQTFFT 640 
WD40-rpts                                                                                      

Query      641 QPAIFVVEYALAQLWFEWGIRPVAMIGYSIGEFVAATLAGVLSLEDALTLVAKRAQMIQELPAGAMLAVPLTEQEVQPFL 720 
WD40-rpts                       (______________________________________WD 1____________________

Query      721 SEKLSLSAINGSSLCVISGCTEAVDELEHHLTQKGLACRRIVTSHAFHSKMMEAIAPGLHSLVKTFNLQPPKIPYLSNVT 800 
WD40-rpts      __________________)                                                             

Query      801 GTWITAEQATDPSYWVKHLCQTVQFASAVQELSKKHNPVLLEVGSGQTLSSLALSILQSDRLVDRVVLPSLRHSYERQSD 880 
WD40-rpts                                                                                      

Query      881 IAFLLNTLGQLWLAGVQIDWAGFYSHERRDRLPLPTYPFERQRYWIEPHKQTQVVAISQTCSPEHFQGGEAQEYQLPTNS 960 
WD40-rpts                                                                                      

Query      961 EIVSELSLHSRPHLRNSYVAPSSELEHKIASFYQQSLGIEQVGIYDNFFELGGNSLIGIQVIAQLRKNFQLELSLRALFE 1040
WD40-rpts                                                                                      

Query     1041 APSVAELGLFIEEMIIAELEELTEDEAQELVSVFTQNQQALITVS 1085
WD40-rpts                                                   

1 WD40-repeats found in QUERY=gi_186683601_ref_YP_001866797.1_ (Len=1085):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   658-739      3.04  240.22  0.03547       12.5%     35.25

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  658-739    WGIRPVAMIGYSIGEFVAATLAGVLSLEDALTLVAKRAQMIQELPAGAMLAVPLTEQEVQPFLSEKLSLSAINGSSLCVISG

   WD40 Template    TGECLRTLSGHT-------------S---------------------GVTSVSFS--------PDGKRLVSGSEDGTIKVWD