Input parameters:

  Query = gi_186683590_ref_YP_001866786.1_ (Len=968)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683590_ref_YP_001866786.1_, Len=968):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKNDNLQQNQIGDLDIAIIGMSGRFPQAKNLDIFWQNLQKGLESISFFSNQELEALGVDPTTLNDPNYVKANAVLEDIEL 80  
WD40-rpts                                                                                      

Query       81 FDASFFDYSPKTAEIIDPQHRLFLETAWEALESAGYDSKTYKGRISVYGSASISSYFLFNLFSNSELIKLVGLDQIRHHN 160 
WD40-rpts                                                                                      

Query      161 RTDNLTTRVAYKLDLKGSAITIQTGCSSSLVAVHLACQSLIDRECDLVLAGGVSVTTLQKTGYSYQEGGILSPDGHCRAF 240 
WD40-rpts                                                                                      

Query      241 DAKAQGTVGGNGVGIVILKRLADAIADGDYIHAVIKGSAINNDGSAKIGYTAPSIDGQAKVIAEALAISRIEPDMVSYVE 320 
WD40-rpts                                                                                      

Query      321 AHGTGTVLGDPIEIAALTKSFRARTQKKNFCAIGSVKTNIGHLDTASGVASLIKTVLALKHKQIPPSLHFEQPNPQIDFA 400 
WD40-rpts                                                                                      

Query      401 NNPFYVNDKLSEWKSNGHPRRAGVSSFGIGGTNAHVILEEAPVREQGEHTSTTLSNRGRQGRKYQLLVLSAKTESALQAA 480 
WD40-rpts                                                                                      

Query      481 TANLANHLKQHPDLNLADVAYTLGIGRRAFVHRRMVVCQDIEDAIKVLEAKDPQRVLTHYQEPGELEVVFMFPGQGSQSV 560 
WD40-rpts                                                                                      

Query      561 AMGRELYQTEPIFREQVDDCCEQLKHILELDLRTILYPCEEQTQWATEQLTQTHITQPALFVVEYALAQLWLAKGVCPSA 640 
WD40-rpts                                                                               (______

Query      641 MIGHSIGEYVAACLAGVFSLEDALMLVAKRGQLMQQLPSGAMLAVALPERKVIPILGAKLCIAAINAPERCVVSGLSSEI 720 
WD40-rpts      ________________________________WD 1______________________________________)     

Query      721 EDLQNCLTQQGVDCRLLRTSHAFHSQMMDSIIEPFKSLLAKVNLNPPKIPFLSNVTGTWITTKEATDNSYWVKHLRSSVR 800 
WD40-rpts                                                                                      

Query      801 FADGISELCKQPNRIFLEVGFGCTLSTLTKQQSQGQLVLCSIGHPHNQQSDVAFLLNTLGNLWLYGIQVDWSSLYAHEKR 880 
WD40-rpts                                                                                      

Query      881 YRLPLPTYPFERKRYWVESTKVNELNQLQNKQINHLEDESQDLFFDSHQNNILKLGSRGEKYDNFLQKIVNKQIAVMFQQ 960 
WD40-rpts                                                                                      

Query      961 LDILEKDM 968 
WD40-rpts              

1 WD40-repeats found in QUERY=gi_186683590_ref_YP_001866786.1_ (Len=968):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   634-715      3.47  257.81  0.02070       17.5%     34.90

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  634-715    KGVCPSAMIGHSIGEYVAACLAGVFSLEDALMLVAKRGQLMQQLPSGAMLAVALPERKVIPILGAKLCIAAINAPERCVVSG

   WD40 Template    TGECLRTLSGHT-------------S---------------------GVTSVSFS--------PDGKRLVSGSEDGTIKVWD