Input parameters:

  Query = gi_186683588_ref_YP_001866784.1_ (Len=1959)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683588_ref_YP_001866784.1_, Len=1959):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNDSIASTPKTGSEIAIIGIAGKFPGAKNTDEFWQNLQRGVESISVFTDEELLASGIDAATLKNPKFVKARAVLEDVELF 80  
WD40-rpts                                                                                      

Query       81 DASFFGFNPREADITDPQHRLFLECAYIALEDAGYDSENYQGSIGVYAGASFSGYLLNVYLNEDIIKSIDYHQLAIAGDK 160 
WD40-rpts                                                                                      

Query      161 DYLTTRVSYKLNLEGPSYTVQTACSTSLVAVHLAAQSLLNGECDMALAGGVSINSSGKTGYLYKEGGIGSPDGHCRAFDA 240 
WD40-rpts                                                                                      

Query      241 QAQGTVGGEGVGIVVLKRLDDALADGDTIHAIIKGSAVNNDGSFKVSYTAPRIDGQAKVIRTAQVVAEVEPETITYIEAH 320 
WD40-rpts                                                                                      

Query      321 GTGTSLGDPIEIAALTQAFRATTEKKGFCAIGSVKTNIGHLDAAAGVTGLIKTVLALKHQQIPPSLHFQQPNPQIDFANS 400 
WD40-rpts                                                                                      

Query      401 PFYVNTTLTEWTTNGIPRRAGVSSFGIGGTNAHVILEEAPAKEQGSRGAGEQGRKYHLLVLSAKTESALETATANLANHL 480 
WD40-rpts                                                                                      

Query      481 KQHPNLNLADVAHTLGIGRRAFDHRRIVVCQDMNDAVKVLSTSDSQRVFTHYQQPCHRPVVFMFSGQGTQYVNMARELYG 560 
WD40-rpts                                                                                      

Query      561 SEPIFTLTVDSCCELLQPHLGFDLRHVLYPDEAQNAKATLELQQTSVAQPALFVIEYALAQLWMAWGVQPEAMIGHSIGE 640 
WD40-rpts                                                                       (______________

Query      641 YVAATLAGVFSLEDALMLVAIRGRLIQQLPTGEMLSVQLPEQEVQPLLDSQLSLAASNGPSYCVVSGATEAINRLQQQLE 720 
WD40-rpts      ________________________WD 1______________________________________)             

Query      721 AKGVACRKLHTSHAFHSQMMEPILQPFTQQLQKLQLHPPTIEFVSNVSGTWITVAQATDPNYWVKHLRQTVRFSEGMTEL 800 
WD40-rpts                                                                                      

Query      801 FKIQERIFLEVGPGRTLSTFAKQHHQEKLVVLTSIRHPQEQQSDVAFLLNSLGQLWLFGVKVDWSGFYANEQRHHIPLPT 880 
WD40-rpts                                                                                      

Query      881 YPFERQRYWIELQKQPHLGGQSQPKATATELGKSLVEVCRVKARASIATLDAPTYLLNKQYLDRLCTAYINLALQRLGAF 960 
WD40-rpts                                                                                      

Query      961 NNSNEQYSSKELCEQFQIIPRYRQLLYRFLDVLVEQGHLKQEKDLFTNLVPCSIDSINTLVEEVKIRYVDTLHELNIVRE 1040
WD40-rpts                                                                                      

Query     1041 CGENLPNVLIGEKEPLELFFAVKDHKPKPEANSELPLNTHLQGIIRTGMEQVVKSLPSDVNLRILEIGGGQGIATAELLP 1120
WD40-rpts                                                                                      

Query     1121 VLPSERTNYTFTDVGGLFLNQAKQQFSAYPFVEYHFLDIEKPPTAQGFNSHSFDVVVAVNVLHVTQNITKTLEHVRSLLA 1200
WD40-rpts                                                                                      

Query     1201 PGGFLLLWEITQPQLNFDITDGLLMNPLEDEGRNRGNPFLSQEQWQDALRSHGFVEVAAVSETEAFGEQILVAQTAVSVT 1280
WD40-rpts                                                                                      

Query     1281 DSAPTAFTVTKQKAPKEQYQDLLSKKPDIADWFYIPSWKRTMPPQPFQPGFGITQPGCWLVFVDEFGLGERLVKQLVLEN 1360
WD40-rpts                                                                                      

Query     1361 QDVITVKVGEQFQQSSEYSQYTYTINPEKEDDYNTLLKGLRTLGKIPRRIVHLWSVTSNSYTNSAIEALGWSSLLFLGQA 1440
WD40-rpts                                                                                      

Query     1441 MSDDKALRVYAENNQTDAVEIAIVSNNLQEVTGSEMLCPEKALVLGACKVMPLEYANINCRSIDVVIPESESGEEQLIKA 1520
WD40-rpts                                                                                      

Query     1521 LIAELTTYTSDQVIAYRGRNRWVQDFEPVQLHGTVAGNLLREQGVYLITGGLGGVGLLLAEYLAQTVQAKLILLGRSAFP 1600
WD40-rpts                                                                                      

Query     1601 DQDKWSEWLSTHDRHDSISQKIQKLQAMKTLGAEVMVVSTDVTNLEQMSAVLKKANQRFGEIHGVIHAAAVYGGGMMQLA 1680
WD40-rpts                                                                                      

Query     1681 TKETVASAIAPKVQGTRVLETLFQESKLDFFVLCSSLSSFAGTSGMVDYTAANAFLDSFAQYSAAKYGTWKFIKSINWDR 1760
WD40-rpts                                                                                      

Query     1761 WNNVGMAVPVEARHQQITGKELIAGMTAFEGIEAFKRILCSSTVPQVIISTQDFLSLIKPKESVESLEEKLAQLSQYKST 1840
WD40-rpts                                                                                      

Query     1841 HPRPNLANTYVAPNNEIERNLADIWQQILGIEKVGIHDNFFELGGDSLFATQLVSQLCKVFQIELSYKGFFNGPTVADLA 1920
WD40-rpts                                                                                      

Query     1921 EVIVQKMAEQTNSEELAKALADIEQLSENEVYAIITSQN 1959
WD40-rpts                                             

1 WD40-repeats found in QUERY=gi_186683588_ref_YP_001866784.1_ (Len=1959):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   626-707      3.34  252.62  0.02427       20.0%     36.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  626-707    WGVQPEAMIGHSIGEYVAATLAGVFSLEDALMLVAIRGRLIQQLPTGEMLSVQLPEQEVQPLLDSQLSLAASNGPSYCVVSG

   WD40 Template    TGECLRTLSGHT-------------S---------------------GVTSVSFS--------PDGKRLVSGSEDGTIKVWD