Input parameters:

  Query = gi_186683583_ref_YP_001866779.1_ (Len=1809)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683583_ref_YP_001866779.1_, Len=1809):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMNKLDKINNVDEADIAIIGLSGRFPKAENIEQFWQNIRDGVESISFFSAQELESAGIDSVTVSHPNYVKAAVPLEDIDL 80  
WD40-rpts                                                                                      

Query       81 FDASFFGYNPRDAEIMDPQHRIFLECACAALENAGYNPQTYSGSIGVYAGSTISNYLFNLYSNPNIRELASDVEISLGNH 160 
WD40-rpts                                                                                      

Query      161 PDYLPMRVSFKLNLTGPSYAIQTSCSTSLVAVHVACQSLLNYECDMALAGGISILNMQPKGGYLYQEDGVLSPDGHCRAF 240 
WD40-rpts                                                                                      

Query      241 DAKAKGTIFGSGIGIVVLKRLKDALADGDRIHALIKSSAVNNDGSLKAGFTTPSVEGQTEVIAEAIAAAGVEADTITYVE 320 
WD40-rpts                                                                                      

Query      321 AHGTGTPIGDPIEIKALTKAFRVSTPKRGFCAIGSVKTNVGHLDAAAGIAGLIKTILALKHKQIPPSLHCEQPNPQIDFA 400 
WD40-rpts                                                                                      

Query      401 NSPFYVNTALSEWKSDRIPRRAGITSLGFGGTNAHLIVEEAPPIEASNVGKTHKLLMLSAKTNSALETATVNLTNHLKQH 480 
WD40-rpts                                                                                      

Query      481 PDTNLADVAYTLQVGRQTFNHRRILVCHDIDDAVEALHTLEAQQVFTHYQQPCNRPTVFMFPGQGAQYVNMGRELYHSEP 560 
WD40-rpts                                                                                      

Query      561 KFTEEVNRCCLILKPHLGLDLRDILYPSEAQTQTATQQLKQTSIIQSALFVIEYALSKLWMAWGVLPEAMIGHSLGEYLA 640 
WD40-rpts                                                                    (_________________

Query      641 ATLSGVFSLNDALALVAARGRLMQQVPTGAMLSVQLSEQEVQPLLPKELSLAGINSPSLCVVSGSTDAIDKLQQQLLEKN 720 
WD40-rpts      _____________________WD 1______________________________________)                

Query      721 ISCRKLHTSHAFHSQMMDAIIEPFTELLQKVKRNPPQIPFISNVTGTWITTAEATDPHYWARHLRQTVRFDEGMTELLKQ 800 
WD40-rpts                                                                                      

Query      801 PERILLEVGPGQTLSTFAKQHYNLEPVVLTSIRHPQEQQSDVAFLLNTLGRLWLFGFQVDWSGFYANEQRYRIPLPTYPF 880 
WD40-rpts                                                                                      

Query      881 ERQRYWISPQAQPRDVHATEVSLNKKPDIADWFYLPLWKQSAPPELLGKGDLAEQKFCTLVFTDECGLGSQMVKRLEQQG 960 
WD40-rpts                                                                                      

Query      961 QDAIAIQIGSEFSKVSECLYTLNPRQSNDYDALLNELLVQNKIPKTIIHLWSVTPDYHAESELEWFDSAQYLGFYSLLFL 1040
WD40-rpts                                                                                      

Query     1041 TQALGKQNWTDKFKITVVSNNIQSVTAEEMLCPEKATVLGPVKVIPQEYSNISCRSIDIALPKPGSWQEEKLVDYLLDEL 1120
WD40-rpts                                                                                      

Query     1121 QTKSSKLVIAYRGLNRWVQTFEPVRLSESKGKTSRLRNGGVYLITEGLGNIGPILAESLAQTVQAKLVLIGQKNLPEKDE 1200
WD40-rpts                                                                                      

Query     1201 WFGWLNTHDRQDEVSCKIRKLQALEELGAEVLVLSADVTNLEQMQRAIAFVTEHFGDIHGVIYAVEIVDDKSLKSIQETS 1280
WD40-rpts                                                                                      

Query     1281 QTDYQCHFQSKANGLFVLEKVLQGRQLDFYLLISSSSSILGGLRSVAYSAANIFMDIFAQKQNQINPVPWISVNCERWEL 1360
WD40-rpts                                                                                      

Query     1361 GEEKNTASRTTLAELFITPEEGIKAFQRILTSDKITQVVLSAGDLQARFDQWLKLKSLSDVEQTSFAGDIKKKLASTSLA 1440
WD40-rpts                                                                                      

Query     1441 KILHPRPNLGNDYVAPRTHTEQTLANIWQEILCIESLGINDDFFELGGHSLLAVHLIAKINNQFGKNIQLSAIFQSPTIK 1520
WD40-rpts                                                                                      

Query     1521 QLANILHDRADYRTSSPLVAIQPHGSKPPLFFVHPVGGNILCYYELSLHLDSDQPFYGLQALGLNGESQPYTRIEDMAAK 1600
WD40-rpts                                                                                      

Query     1601 YIEALREIQPNGPYFLGGWSMGGIVAFEMATQLLRNGDRVAMLAMLDSPAPVNSKEIAEIDDYNDVKILVDFATDMAQSA 1680
WD40-rpts                                                                                      

Query     1681 GKNLSGSVEQLQALMTLDEQLNYFLEQARIVNLLPLDFELEQLRCLLKVFKSNVLALQSYTPQVYPNKILYFQASDEVSN 1760
WD40-rpts                                                                                      

Query     1761 EFSNPTYIWGGLSGKPIEIITIPSNHYTIITKPHIQIILEYLNIFMNQI 1809
WD40-rpts                                                       

1 WD40-repeats found in QUERY=gi_186683583_ref_YP_001866779.1_ (Len=1809):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   623-704      3.64  264.82  0.01668       25.0%     36.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  623-704    WGVLPEAMIGHSLGEYLAATLSGVFSLNDALALVAARGRLMQQVPTGAMLSVQLSEQEVQPLLPKELSLAGINSPSLCVVSG

   WD40 Template    TGECLRTLSGHT-------------S---------------------GVTSVSFS--------PDGKRLVSGSEDGTIKVWD