Input parameters:

  Query = gi_186683535_ref_YP_001866731.1_ (Len=773)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683535_ref_YP_001866731.1_, Len=773):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSEQANSLSPIKRALMALEKMQAQLDAVEYAKKEPIAIVGMGCRFPGGADNPEAFWQLLRDGVDAIIDIPGDRWDTAAY 80  
WD40-rpts                                                                                      

Query       81 YDPNPDTPGKIYTRKGGCLSDRLDSFEPQFFGISATEAKSLDPQQRLLLEVAWEALENANQSPEKLFNSLTGVFLGICSN 160 
WD40-rpts                                                                (_____________________

Query      161 DYNNMIWQTGGATQVDAFCATGNALSVAAGRLSYFLGLKGPSLAVDTACSSSLVALHLACQHLRNQECHLALVGGVHLLL 240 
WD40-rpts      ____________________WD 1________________________________________)               

Query      241 SPETSVAFARTKMLDADGYCKTFDADANGYVRGEGCGVIVLKRLSDAVAHKDKILAVIRGSAVNHNGRSSSLIAPNGPSQ 320 
WD40-rpts                                                                                      

Query      321 QALIRQALENASVEPAAVSYIEVQGTSTSLGQPIEVEALAAVYGKNRPLDNPLLIGSVKTNIGHLEAASGIASLMKIVLA 400 
WD40-rpts                                                                                      

Query      401 MQHGQIPPHLHLHQPNPYIDWEKLPVKVPTQNIPWDKGDRQRLAGISAFSFSGTNAHIVLEEYTNAENPQGLSRSLHILA 480 
WD40-rpts                                                                                      

Query      481 LSAKTQESLVQLTAAYEKYLVGNPELNLADICFTANTKRSHFPYRLAVTAASTLELAGKLGAFRDGKAVEGLSQGKATTN 560 
WD40-rpts                                                                                      

Query      561 FPEELQIPDLNSKSINWQSILENVTQSYIKGVTIDWAALYPDDLCARLQLPNYPWQRQRYWIESGTQINADLSIIDSIKQ 640 
WD40-rpts                                                                                      

Query      641 GNVHQLTQQLSAAENLSADEWELLSQLLTKLTDPSPSIQQLQRQSLTLTDIQNWLVSQIAKEMGVKPDDIEVQAPFDSYG 720 
WD40-rpts                                                                                      

Query      721 LDSMLAISIANAGQKYLGIQVSPLMLVHYPTIAVLSQHLATELAASETEAFEI 773 
WD40-rpts                                                           

1 WD40-repeats found in QUERY=gi_186683535_ref_YP_001866731.1_ (Len=773):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   139-225      2.80  230.25  0.04802       20.0%     -2.43

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  139-225    ANQSPEKLFNSLTGVFLGICSNDYNNMIWQTGGATQVDAFCATGNALSVAAGRLSYFLGLKGPSLAVDTACSSSLVALHLACQHLRN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD--------------GKRLVSGSE----DG------TIKVWD-----------------------