Accession: gi_186683377_ref_YP_001866573.1_ - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = gi_186683377_ref_YP_001866573.1_ (Len=1863)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683377_ref_YP_001866573.1_, Len=1863):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVTEMSKSNERVEELSPLKRALLALETMQGKLNRLESKKTEPIAIVGMGCRFPGGVNNPQTFWQCLRDGVDAMQEIPGDR 80  
WD40-rpts                                                                                      

Query       81 WDLETYYNVDADAAGKMYTRHGAFVDDVDKFDADFFSISPREAAFIDPQQRLFLEVCWEALEQSGERPDQLAGSRTGVFV 160 
WD40-rpts                                                                                      

Query      161 GVMYADYSRLQGTVIDAYSSTGNSMSVVSGRVSYLLGLQGPSVTLDTACSSSLVTVHLACQSLRSGECNLALAGGVSLML 240 
WD40-rpts                                                                      (_______________

Query      241 IPDNNITLCRTRALSPTGRCKTFDADADGFARGEGCGTIALKRLSDAIADGNPILAVIRGSAVNQDGRSNGLTAPNGPAQ 320 
WD40-rpts      ________WD 1______________________)                                             

Query      321 QAVLREALANAGVKPHQVSYVEAHGTGTPLGDPIEVSSLAAVLGEGRSPNHPLALGSVKTNIGHLESAAGVAGLIKVVLA 400 
WD40-rpts                                                                                      

Query      401 MQHQQIPPHLHFQKLNPYISWGNLPISIPTELTPWDSGTERRIAGVSSFGFSGTNAHVILEEAPLLPTEPALVSVKDYLL 480 
WD40-rpts                                                                                      

Query      481 PLSAKNPAALLDMAQAYRAFLPGKTNLLDIAYTTSLRRPHHKHRIALVGQSIEQLTAALDAFVEGESHPNLVPSNPHSDD 560 
WD40-rpts                                                                                      

Query      561 LSGLVFVFSGQGAQWIGMGRQLLAQELVFRETIQECDRILKSLTHWSLLQELAAPEDISRLQDTEVAQPAILAIQVALTA 640 
WD40-rpts                                                                                      

Query      641 LWRSWGIEPAAVVGHSLGEITGAYVAGVFSLETALRIVVQRASLMQQATGKGKMAAIGMPWQELKPWLEEFPGLAIAAIN 720 
WD40-rpts                                                                                      

Query      721 SPASTVVAGDATALETLSQKLQAQEIFCRLLRVNYAFHCPQMQLYSEELVNLLAGLQPQVAQLPLFSTVTGTSSEGRDWD 800 
WD40-rpts                                                                                      

Query      801 AAYWGRNMRSPVQFSQAIENSVYEGYTCFVEVSPHPVLSQNIQECLQHTGKAGIVLASMHRERQERYFLLSELGRLYTLG 880 
WD40-rpts                                                                                      

Query      881 YQPRWQALYPENRRCVLLPTYPWQHQRYWLEGSNSLPARRTSRQPLLGESLPSLAHLPEMRIWQTQLDLRSLPYLNDHRV 960 
WD40-rpts                                                                                      

Query      961 QGVMVLPGSGYVEMVLAAATEIFGAGKHTLEVLHFQQGLFIPEAETQTVQICLQPGNTPDTLNFDCYSRLSINPETKWRH 1040
WD40-rpts                                                                                      

Query     1041 HASGTVCRGDGEITPTIPVTVAEIQARCQEVISGTQHYQQMAEQGLLYGASFQGVEQIWRREGEALGRIHLPASLHAEIA 1120
WD40-rpts                                                                                      

Query     1121 NYQIHPVILDACFQVIALATPLANPDAEAEGAYLPVRLDKLRLYQQPDATGLWAHLQLKPVVETDAFAAELVLFNDQGQR 1200
WD40-rpts                                                                                      

Query     1201 ILDAECLRIQKLDSQSENNSSDWFYEISWERLLRQTDRETEGHSEQNQGYWLILTDRQGIGENLSQQLQQQGGNCILAFA 1280
WD40-rpts                                                                                      

Query     1281 GETYQKQDSQHYQIQPNCLDDFKQLLQTVSSECLGIVHLWSLDITPAELTTLASLTGDDNMGDRPLGDRNLGCISTLHLV 1360
WD40-rpts                                                                                      

Query     1361 QALAETGWQNTPRLWLVTRGAQPVDSNLSIAQSPLWGLGRVIAQEHPDWRCSMVDLAPVPEPSEIPSLLQLLQADDVENQ 1440
WD40-rpts                                                                                      

Query     1441 IALRGDVSYVARLKRYLPSYSELPNFHPQATYLIAGGLRGLGLQVATWMVERGARYLALMARSQLTPETLEVLQTLETAG 1520
WD40-rpts                                                                                      

Query     1521 AKIKVLQADISQAEEVAKAITQLDQDMPPLRGVIHSAAVLDDGILLQLTPERLHKVMQPKIEGAWNLHTHTLNKPLDFFV 1600
WD40-rpts                                                                                      

Query     1601 LFSSAASLLGSAGQGNYAAANAFLDGLAHYRQSQNLPALSINWGAWAEIGLAAAQTNRGDRMASLGFSSILPQQGLDILG 1680
WD40-rpts                                                                                      

Query     1681 HLLTDKTAQLGVIPINWAKVLRANPAVIKMPLFQLLTEVFSSSGEIDTDKSTNFLSRQALLATPLDERQLLLETYFHEQV 1760
WD40-rpts                                                                                      

Query     1761 ARVLRMPASKLDRHQPLNSQGLDSLVAVELKNKLKNDLGIDLPMIRFIQGPSIAQLSAQVLTQITQEMSSVSSVLVSPPH 1840
WD40-rpts                                                                                      

Query     1841 LRSNSARPVELATSNQEWEDGEL 1863
WD40-rpts

1 WD40-repeats found in QUERY=gi_186683377_ref_YP_001866573.1_ (Len=1863):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   225-275      3.58  262.38  0.01798       27.5%      3.75

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  225-275    SGECNLALAGGVSLMLIPDNNITLCRTRALSPTGRCKTFDADADGFARGEG

   WD40 Template    TGECLRTLSGHTSGVTSV----------SFSPDGK-RLVSGSEDGTIKVWD