Input parameters:

  Query = gi_186683375_ref_YP_001866571.1_ (Len=1560)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683375_ref_YP_001866571.1_, Len=1560):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNKIDTKQNNINQLQRALLALKEMRGKLEAIERAKTEPIAVIGMACRFPGGADNPDAFWQILQHGVDTIQEIPQERWDTE 80  
WD40-rpts                                                                                      

Query       81 AYYSPNPDAEGKSYIRYGGFLKDIDLFDANFFEISPREAVSTDPQQRLLLEVSWEALENAGQCIEQLSQTQTGVFIGVMN 160 
WD40-rpts                                                                 (____________________

Query      161 NDYSRLYAGNSNSIDTYFGTGNSFSFISGRLSYILGLQGPSLVVDTACSSSLVSLHLACQSLRSGECDQALAGGVNLILS 240 
WD40-rpts      __________WD 1______________________________)                                   

Query      241 PDTNIFLSKMRAVAPDGRCKSFDASADGYTRGEGCGVLVLKRLSDAVAAGDSILALIKGSAVNHDGPSGGLTVPSGPAQQ 320 
WD40-rpts                                                                                      

Query      321 KLLRQALANSRVAPQQVSYIEAHGTGTSLGDPIEINALASVLCEQRSFEQPLVVGSVKTNIGHLEAAAGVAGVIKVILSL 400 
WD40-rpts                                                                                      

Query      401 QHQKIPPHLHLKQPNPHIPWQELPLAIPTTPKPWHSENNTRIAGVSSFGLSGTNAHLVIEAAPLEEAGGAGEQGNRGEEI 480 
WD40-rpts                                                                                      

Query      481 RERPLHLLTLSAKHPQALQQLAQNYIKYLSSHPDIALGNITFTSQVGRTHFSHRLAIIAADYQQMQQQLQAYLNDTDDFS 560 
WD40-rpts                                                                                      

Query      561 IHHGHSSQQTKKIAFLFTGQGSQYRNMGRQLYETQPSFRQTLDQCDTLLQPLLGESILSVIFSDNSESDRLNHTAYTQVA 640 
WD40-rpts                                                                                      

Query      641 LFVIEYGLAQLWLSWDIRPTAVVGHSVGEYVAACIAGIFCLEDALKLIVQRASLMQALPQGGGMAAVFATVEQVRPLIAD 720 
WD40-rpts                                                                                      

Query      721 YLQQLSIAAINGEQSIVLSGELEILNSVLQKLESQGIETRKLQVSHAFHSPLMQPMLAKFEQVTATVKYQQPKLDIVSNV 800 
WD40-rpts                                                                                      

Query      801 TGKIVRQQEMSNAAYWVEHIRASVQFAASMLALYQAGYEVFVEVGSHPTLLGMARRECPEVLEEKGLWLASLRKSRGDWQ 880 
WD40-rpts                                                                                      

Query      881 QLLDSVAQLYVAGVEIDWRGFESDYARNKVILPNYPWQRQRYWLPTATTVPSPSSQSSLSAELQDWLYEVQWQPQTSSDK 960 
WD40-rpts                                                                                      

Query      961 TLAIAPAHWLILSDRTGVADNLAQLLAEQGHTYTLVFSGDCTHFEQLLDGIPTQLPLQILHLWSLDNTKEADLMLTNIQN 1040
WD40-rpts                                                                                      

Query     1041 HVSAVLHLIQALASRQESISARLWLVTEGTQVIGEHSGEIAIAAAPLWGLGGAIAMEYPEIWGGLMDLDPSSSPADTAAL 1120
WD40-rpts                                                                                      

Query     1121 LLAKLPTMILGDRIAWRHQQWHTARLVRSQISPVAAKSLKFTPEVTYLIAGGLGALGLQIARWCVEQGARYLVLLGRSSP 1200
WD40-rpts                                                                                      

Query     1201 SESAQATIRELEQTGTQITVVQADIAQAEQLQPALTALLTNHPPLRGIIHAAGVLDDGMLLQQNWERFAKVMAPKIQGAW 1280
WD40-rpts                                                                                      

Query     1281 NLHTLTLDQPLDFFVLFSSTACILGAPGQSNYAAANAFLDALAHYRQKQGLGATSINWGPWAEVGMAASFGQRLAAEGID 1360
WD40-rpts                                                                                      

Query     1361 LIPPNQALQLLKHFLQQRVCQVTVLPINWTQFLQRFPTGQQPAYFRELFSDGQQQENQPSELQQRLQATPVNEWKSLLVA 1440
WD40-rpts                                                                                      

Query     1441 HISDELTSILGLISSQTIDPLQGFATMGMDSLTSVEFRNRLQKSLGKSLPSTLTFNYPNIDTLASYFVNTLDNQNMPPET 1520
WD40-rpts                                                                                      

Query     1521 KPTLVNPSQSMTVTQIKQLSEEQVESMIDEELASLIEFSH 1560
WD40-rpts                                              

1 WD40-repeats found in QUERY=gi_186683375_ref_YP_001866571.1_ (Len=1560):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   140-205      3.13  243.88  0.03171       27.5%      4.78

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  140-205    AGQCIEQLSQTQTGVFIGVMNNDYSRLYAGNSNSIDTYFGTGNSFSFISGRLSYILGLQGPSLVVD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD------------GKRLVSGSEDGTIK--------------VWD