Input parameters:

  Query = gi_186683374_ref_YP_001866570.1_ (Len=2833)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683374_ref_YP_001866570.1_, Len=2833):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGCRFPGAKNPAAFWQMLRDGMNAITQVPANRWSMDDLYDPDLATPGTMNSRWGGFLQNVDQFDAKFFGISPGEAASTDP 80  
WD40-rpts                                                                                      

Query       81 QQRLLLEVAWETLENAGLNPQQVSGSQTGVYIGIGSNDYANVCFEDLTQLNAYFVTGNALCTTVNRLSYFFGWQGPSLAL 160 
WD40-rpts                     (___________________________WD 1__________________________)      

Query      161 DTGCSSSLVAIHLACQSLRTREIDQALVGAVNLILSPKANIGLSQAWMMTSDNCCKSFDAAADGYVRGEGCGLVLLKRLE 240 
WD40-rpts                                                                                      

Query      241 DAIRDKDRILGIIRGSAVNQNGFGKNLTAPNQLAQQSVISQALANAGVEPQQISYIEAHGVGTPLADVTEASALKAVLRP 320 
WD40-rpts                                                                                      

Query      321 EGDTLPCFLSSVKTNIGHLEPAAGIAALIKVLLCFQHQEIPPHLHFQTLNPDIGDDFPFIIPTTASPWELNNTPRLAGIN 400 
WD40-rpts                                                                                      

Query      401 SFGLGGTNAHLVLEEPPLERAEEQGSRGTEEQRSRGGENTIERPLHLLTLSANSEKALRELANLYNTHIAKSVNIYLPDI 480 
WD40-rpts                                                                                      

Query      481 CYSANIGRAALKHRLAILVDTFESLQQELSAFASEQEAGEWFYGQQNSIKVGFLFTGQGTQYIDMGRELYDTQPVFREVL 560 
WD40-rpts                                                                                      

Query      561 ERCDRLLTPHLNKSLLSILYPESGSKLLLHETAYTQPALFGLEFALAEMWRSWGIKPYCVMGYSLGEYVAACVAGVLSLE 640 
WD40-rpts                                                                                      

Query      641 DALILVAKRGQLMQQLPQTGAMAWVYTSIDKVITVLLPYQHQVGIAAIHGQEEILIAGKSQAVQQILQQLKSEGIAFLKL 720 
WD40-rpts                                                                                      

Query      721 KINQAFHSPAVEPILDAMEELAATFTYNPPQINWVSSVTGKLVEAIAPQHWRNHLRDTLQFSTAVDTLIAQGCNLFLELG 800 
WD40-rpts                                                                                      

Query      801 PSSTLAEAGKRYRPQSEEIWLSSLKEGFEDWQQVLSTLSALYVQGANVNWAGFDHNYQHQRLELPTYPFQRKRHWIDART 880 
WD40-rpts                                                                                      

Query      881 QRPEINFVGTRNLAFPLWENLNLEEMSASQRWEKLQAYVQTEAATVLGLEPTEKLDPNEGFATLGMKSLMAIELKNHIQT 960 
WD40-rpts                                                                                      

Query      961 QLGHSYSLAATLAFDYPTITTLTEYLGREVLNLDSPSTNHENLPQSCKDAINRISTEDIAIIAMGCRFPGGANNPEQFWQ 1040
WD40-rpts                                                                                      

Query     1041 ILQKGIDAITEIPSQRWNLDNYFDSEPETPGKMYTRHGGFIADIDQFDAQFFGISPREAISLDPQQRILLEVSWEALENA 1120
WD40-rpts                                                                                      

Query     1121 AIAPQNLVGSQTGVFIGLISNEYMQLQIQHKDPEKIDAYYGTGGIGSAAAGRISHSLGLRGPSLVVDTACSSSLVSIHLA 1200
WD40-rpts                                                                                      

Query     1201 VQSLRRGECNLALAGGVNLILLPETNIFLSKSKAVAADGRCKTFDASANGFVRGEGCGVVVLKRLSEALADNDPILAVIR 1280
WD40-rpts                                                                                      

Query     1281 GSAVNHDGRSSGFTVPSTTAQQELLHQALANANVEAQQVSYIEAHGTGTSLGDPIEVGALASVLCAGRSFEQPLVISSVK 1360
WD40-rpts                                                                                      

Query     1361 TNIGHLEAAAGVAGLMKVVLALQHQEIPPHLHLQQPNPMIAWEQLPLSVPTSGQSWVVKDSARIGGVSSFGMSGTNAHVI 1440
WD40-rpts                                                                                      

Query     1441 VQEAPLGGAGEQGNRGAEITIERPLHLLCLSAKHSNSLRQLAEQYIDYLGKHGDISLANITYTAQVGRSHFSHRLAVIAS 1520
WD40-rpts                                                                                      

Query     1521 SHAEMQAKLEEAEYDYQVDSGNFTRCAFLFTGQGSQYVGMGRQLYETQPGFRRILDECDRILQLFLNKSILSVIFADTTE 1600
WD40-rpts                                                                                      

Query     1601 NPLLDQTAYTQPALFVLEYALAQLWISWGIRPSAVLGHSVGEYVAACVAGIFSLEDGLKLIAHRARLMQALPQTGGMAAV 1680
WD40-rpts                                                                                      

Query     1681 FASAEVVEPLIASYPQQLSIAAYNGEQSLVISGEMQALTAVLQKLESQSIETRILQVSHAFHSPLMASMLAEFEQVAQQI 1760
WD40-rpts                                                                                      

Query     1761 AYHSPQLEIVSNVSGKLTNNAEMSNASYWVEHIQASVYFAQGMSALYSAGYKVFLEVGSHPTLIGMAQRDYPEELDNQGL 1840
WD40-rpts                                                                                      

Query     1841 WLASLRKGKEDWQQILESLSQLYLQGVEIDWLGFENGYTRNKVILPNYPWQHQRYWFETTTKKLVVHSQLHPLLGQRLHS 1920
WD40-rpts                                                                                      

Query     1921 PLFKSLVFESEFHTDNLPFLADHRIYGSIVAPGASYIAMLTLAGRQIFGTNAVSLQQITFREPLIIPEDGSIKVQLILQL 2000
WD40-rpts                                                                                      

Query     2001 GKNQDYSFELFSLEGNEQWCLHATGELSTLYTTRETCSWTEIQARCPEKSTGLQVFYQDVGDTGLDLGVTFQWIGDFWRR 2080
WD40-rpts                                                                                      

Query     2081 DGEAICQMQVPPGCETETKLYPLHPGLIDSCLRLLGGTLPAEIRDADVYVPISLGGFHLWQNLDLSQPLWCHARLQSNNP 2160
WD40-rpts                                                                                      

Query     2161 EMIVGDVQLLDESGQAIAQFSELCLKRSPQQALLKQPNLQDWLYQITWQLQGRTITQSSLVAQQQYWILLIDEDAVGTEL 2240
WD40-rpts                                                                                      

Query     2241 AKLFQAKGESCVAVIPSYTYQSLEQGKIYINPAEPQHFDRLLQEVSIQPGIALHIVHLWSLATGDLLDSTQMRICGSVLH 2320
WD40-rpts                                                                                      

Query     2321 LTQALARINFPLARLWLISRGSQSINLQSEIALSQTPLWGLGRVIATEYSEVFAGLIDLDPQSSTVEAATQLWAEFSHPE 2400
WD40-rpts                                                                                      

Query     2401 LGEQVALRGNQRYVSRLQRVPNTIDFSASFNPSLGTYLITGGLGGLGLTVANWLVERGVQHLVLVGRRSPSDKAKSAIAS 2480
WD40-rpts                                                                                      

Query     2481 WENAGVQVTVTQADITQLEQIQKILEGIEPQFPLRGVIHAAGILDDGILLQQNWERFTRVMAPKLQGAWNLHILTQDKPL 2560
WD40-rpts                                                                                      

Query     2561 ELFVLFSSVASVLGTTGQANYAAANAFLDGLADYRRFQGLAGLSINWGAWAEVGMAATSTGSPVGVEKILPQQGLQILAA 2640
WD40-rpts                                                                                      

Query     2641 LTHQANARQVAVLPVRWSKFIAHYYTQKVPPLLSEFVDSRQTQETAQPVLAAKPYILRQLQEAHTADIQQILFNYIRDEV 2720
WD40-rpts                                                                                      

Query     2721 AKILRFNSSEELQLRQRLFEVGLDSLMAIELRNRLQSSLECSLPTTLLFDYPTLETLTKYLTNDVLDVKTASPPPKSDHP 2800
WD40-rpts                                                                                      

Query     2801 DTEISDIQQLSQTELERSLAAELASIDELMKKI 2833
WD40-rpts                                       

1 WD40-repeats found in QUERY=gi_186683374_ref_YP_001866570.1_ (Len=2833):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    96-154      3.01  239.04  0.03676       27.5%      3.23

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   96-154    AGLNPQQVSGSQTGVYIGIGSNDYANVCFEDLTQLNAYFVTGNALCTTVNRLSYFFGWQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD------------GKRLVSGSEDGTIKV-------WD