Input parameters:

  Query = gi_186683369_ref_YP_001866565.1_ (Len=2274)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (gi_186683369_ref_YP_001866565.1_, Len=2274):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGCRFPGGVNNLETYWQLLSQGIDASREIPSDRWSVDSFYTPHPDTPGKMYTRRGSFIDQVDGFDADFFGIAPREAVSID 80  
WD40-rpts                                                                                      

Query       81 PQQRLLLEVAWEALENAGQSTEKLEGSATGVFIGISTNDYARFHINSGDPNRIDAYSFIGCTPSVVSGRLSYVFGLQGPS 160 
WD40-rpts                                                                                      

Query      161 LTIDTACSSSLTAIHLACESLRKCECNLALAGGVNLMLAPETTIYFCQVKALAADGRCKTFDAAADGYGRGEGCGVVVLK 240 
WD40-rpts                                                                                      

Query      241 RLPDALADGDRIFGLIRGSAVNQDGRSNGMTAPNGSAQQAVIRQALAAAAVQPQEIGYVEAHGTGTVLGDPIEIRALASV 320 
WD40-rpts                                                                                      

Query      321 LCADRSQDNALIVGSVKTNIGHLEAAAGIAGIMKVVLALQHRQIPPHLHFKQANPHIDWQELPLVIPTQLTPWISDRLLA 400 
WD40-rpts                                                                                      

Query      401 GVSSFGMSGTNAHVVLEAAPVEEDKGTRGQGDKRNDESDRVYLLPLSARSPEALKEIAKAYRELLSGSLKLEDICYTASL 480 
WD40-rpts                                                                                      

Query      481 RRVHYEYRLGLVGNSAEELANQLQDFLEDIPNSDVNWGYQGSSRRQQIAFVFSGQGSQWLGMGQELLTQEPVFREALEEC 560 
WD40-rpts                                                                                      

Query      561 DRIIQSHTYWSLIAELSAPPEKSRLDETEIAQPAILSLQVALVALWRAWGVEPSAVVGHSVGEITAAYVAGVLTLADALW 640 
WD40-rpts                                                                                      

Query      641 IVIQRAKLMQQATGHGKMAMLHLPEKAVAELIAPYEDKIAIAAINSPFSTVISGAIEAIEIILEKVEQQGVFCRRLPVNY 720 
WD40-rpts                                                                                      

Query      721 AFHCPQMDGYSRELERILEDIQPKSPYLQIFSTVSGQPEDSPLPLCASAPLPLFDAAYWGRNMRQSVRFAEAMDSLIQAG 800 
WD40-rpts                                                                                      

Query      801 YNLFVEVAPHSVLAKDMLECLSQTQQQGTVLPTMRRGDSTVSLRSLAKLYTLGHKVNWDNFYPNGGKFVQLPTYPWQRKR 880 
WD40-rpts                                                                                      

Query      881 YWIEPIQPNVISTTASELSDWLYEIQWQPQALLIKQQTIAPTHWLIFSDRSGIGETLERILQAQGHTTTVLYCTDASCTD 960 
WD40-rpts                                                                                      

Query      961 AIHRVSKVSNLQIVHLWSLDNTEQLVNCGGVLDLLQALAQVELPAVKLWLVTQGAQPVGEISKELAIAAAPLWGISRVIA 1040
WD40-rpts                                                                                      

Query     1041 MECAEIWGGIIDIDPASTLEEAANLLAAELSQSKSQENQLAFRQQQRYVARLTRTVAIVSTSPLSLRTDSTYLITGGLGA 1120
WD40-rpts                                                                                      

Query     1121 LGLRVAHWLVERGARHLLLLSRRPPGEQAQAAIQEMEQEGAHIQVALADVTNQAELSTILHNLNYPLRGIIHAAGVLDDG 1200
WD40-rpts                                                                                      

Query     1201 ILLRQTWERFAKVLAPKIDGAWNLHLLSRDCALDFFVMFSSVASLIGSPGQGNYAAANMYLDILAHYRRHQGLPALSINW 1280
WD40-rpts                                                                                      

Query     1281 GPWSDVGMAADLNHRNLWSTENGVSYITPEQGLRALEELLKQGKTQAGVVPIAWDKFSTAVQLPLLQQLTTKVSQSPSQP 1360
WD40-rpts                                                                                      

Query     1361 FLLRQLESTPVSDRRELLMSAVQDQVVRVLRLDNSRPIDPERPLQEMGMDSLMAVELRNTLGKLVDKTLPAALIFDYPSI 1440
WD40-rpts                                                                                      

Query     1441 SNLTEYLGKELGIFATTALPPTVESRELSPTEAIAVVGMSCRFPGADDLESFWQLLCNGTDAIREVPGDRWDVDEFYDPD 1520
WD40-rpts                                                                                      

Query     1521 LSFPGTMNTRWGGFINNIDHFDPQFFGISASEARSMDPQQRLLLEVSWEALEHAGYSSEHLAGSQTGVFTGISTWDYFTL 1600
WD40-rpts                                                           (__________________________

Query     1601 QLDPPPRGGTGMALSIAANRLSYLLDLRGPSMAVDTACSSSLVAVDLACQSLRNGKCDLALAGGVNIILSPLTTVACSQA 1680
WD40-rpts      __WD 1____________________________)                                             

Query     1681 GMMAADGHCKTFDQRADGYVRGEGCGVVVLKRLSDALRDDDHILALVRGSAVNQDGRSNGLTAPNGLAQQAVIRQALQNA 1760
WD40-rpts                                                                                      

Query     1761 AVTPDGISYVEAHGTGTALGDAIEVESLWTVLKEGRTDNQPCRISSVKTNIGHLEAAAGIAGFIKLVLLLHREQIPPHLN 1840
WD40-rpts                                                                                      

Query     1841 LQTINPVLNLEQTQLQIPTSLQLWKRGEQPRLAGISSFGFGGTNVHAIVEEAPLEKAGGAEEQRSRGEEIIIERPLHLLT 1920
WD40-rpts                                                                                      

Query     1921 LSAKSESALQNLIGRYHHYLQENTGDRLADICYTANMGRSHFAHRLAFVVNSQAQLRDTLAAFNVREKSPDVLYGKLDTQ 2000
WD40-rpts                                                                                      

Query     2001 RQPKVAFIFAGEGSQYVGMGKQLYKTQPQFRSILEDCDRLLQHHLQQSLLAILEDESLLTQPRYASPAVFALGYALAQLW 2080
WD40-rpts                                                                                      

Query     2081 RSWGVQPSVVMGGGVGEYIAACVAGVFSLEDGLRLITQQESWAEFEPIAKQVKFQVPQIPMVSTFYGQLLAADYIPDIDY 2160
WD40-rpts                                                                                      

Query     2161 WRRCWQAPALFKGAMLALTQKGCNLFLEIGSDPQLSEIQQQGTWLQSIDDWTVLLHSMIAFYINGVAIDWQKFEQGYQRC 2240
WD40-rpts                                                                                      

Query     2241 RVVLPTYPFERKRYWLDPAVIRSFSKKEENLCNE 2274
WD40-rpts                                        

1 WD40-repeats found in QUERY=gi_186683369_ref_YP_001866565.1_ (Len=2274):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 35  1574-1635     3.08  242.06  0.03353       25.0%     10.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1574-1635   AGYSSEHLAGSQTGVFTGISTWDYFTLQLDPPPRGGTGMALSIAANRLSYLLDLRGPSMAVD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD--------------GKRL--VS------GSEDGTIKVWD