WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: gi_186683276_ref_YP_001866472.1_ [Nostoc punctiforme PCC 73102] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = gi_186683276_ref_YP_001866472.1_ (Len=5352) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (gi_186683276_ref_YP_001866472.1_, Len=5352): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTSLNCATFVDLLSYRSLSQPNQIAYTFLVDGDTEEVKLTYQELDQKARAIAVELQSLKAAPGERALLLYPSGLEFIVAF 80
WD40-rpts
Query 81 FGCLYAGVLAVPVYPPRRNQRMTRLQAIVKDSEARFALTTASVLTNIQQGFAQEPELTALHCIAIDKIVSDASNWQKPPL 160
WD40-rpts
Query 161 EKSTLAFLQYTSGSTGTPKGVIVTHGNLLQNSEYIKSAFELTPNSVSVTWLPSFHDMGLIDGVLQPLYTGFPSVMMSPAS 240
WD40-rpts
Query 241 FVQQPIRWLKAISDYKATHCGGPNFGYELCVSKITPEQRANLDLSSWCSAYSGAEPVRRETLEKFAATFKSSGFQAKFFY 320
WD40-rpts
Query 321 PCYGMAEATLMISGGGVADEPVYCVVDPKALEKNQIIQVSEDTPKVKHLVGCGYAWLDTKIAIANPQSLTLCAPEQVGEI 400
WD40-rpts
Query 401 WVSGSSIAKGYWNRPEQTKETFHAYLADTAEGPFLRTGDLGFLKDGQLFITGRLKDVVIIRGCNHYPQDIELTVEQSHQA 480
WD40-rpts (_________________WD 1_________________)
Query 481 LKAGSGAAFSVDIDGEEQLVIVQEVERTYLRHLNLDEVVEAIKTSVSQIHELQVYAVLLLKTGSIPKTSSGKIQRHACRA 560
WD40-rpts
Query 561 GFLAGTLNALNTVDVVIEPQLQNPKESKKMQFSLLYFSSNEAEFSDEKYKLFLEGAKFADRNGFTAVWTPERHFHAFGGL 640
WD40-rpts
Query 641 YPNPSVLSAALTSLTKRIRLRAGSVVLPLHNPIRVVEEWSVVDNLSHGRVDLAFARGWNPNDFVLSPDTHADSKEVMFSG 720
WD40-rpts
Query 721 IQTVQKLWRGENISLPNGVGKQTDIKVYPLPMQRELSIWITCTGGKERFIEAGASGFNILTALLFQPVEELAQKIALYRE 800
WD40-rpts
Query 801 TRKQHGYDPDSGQVTLMLHTFIGEDIKVVRNQVREPFIEYMKSSVNLWRHGSDDLDKLTETEKANLLAYAFERYFHTSAL 880
WD40-rpts
Query 881 FGTPSTCLEMVQRLHEIGVDEIACLIDFGIDGNTVLASLDSLNNLRQLVNGVDEPSIKETIESYNQPKTDVLKQTNNAII 960
WD40-rpts
Query 961 NNSLPAFSIETSLKIPSRQNEEVQVPQGSLLQWIGEVIVQQIANSLGKKSSQISLDKSFYSFGIDSLKAVEIMETLGEKF 1040
WD40-rpts
Query 1041 GFSISPTLLFEYPTPTEFALYLIQEQKTQLQKYLLVNWEPAKLWAVNLERQKAVVLSNKLFNPASTKVVEPINDRIRAED 1120
WD40-rpts
Query 1121 IAVIGMSGRFPQSPDLQSFWELLSQGKNAIAQVPSLRWNLSDWYDKNPGAANKTYSCWGGFIDHIDQFDPLFFQISPREA 1200
WD40-rpts
Query 1201 ELMDPQQRLFLEVAWEALENAGYSPESFAQSQVGVFVGCSNNGYYQRIAPALNTSDYSAGIGNQNAIIANRVSFLLNLRG 1280
WD40-rpts
Query 1281 PSVLIDTMCSSSLVALHMACRSLQQGECTTALAGGVNLLLSPEYYVGMSRMKMHSPNGRCATFDSQADGIVLGEGAGALL 1360
WD40-rpts
Query 1361 LKPLSQALKDGDRIYAVIKGSAVNHDGRTNGITAPNSRSHAEVICQALDAAGISADTISYVEAHGTGTSLGDPIEVEGLT 1440
WD40-rpts
Query 1441 KAFRKYTERKQFCKIGSVKTNIGHLECAAGMAQLLKVILAIQHRQIPANLHFQQPNPLIPFAETPFQVNTKLCSWESSGL 1520
WD40-rpts
Query 1521 RRAGISSFGIGGTNAHIVIEEAPPLEPVIPEIERPKHLLTFSAKTENALVQLVSRYETYLAANLDLPLGDICFTANTGRS 1600
WD40-rpts
Query 1601 HFQHRLSAIATSTSDLHQRLLNFISQQEVTGIKIGRIHENTPPKIAFLFTGQCSQYVGMGSQLYETQPTFRKILDYCNEI 1680
WD40-rpts
Query 1681 LRPYLKEDLLKVIYPQPGETSLIDQTAYAQPALFALEYALVQLWKSWGVEPSVVMGHSVGEYVAACVAGVFSLEDGLKLI 1760
WD40-rpts
Query 1761 AERSRLMQSLPQTGAMVAVFACEADIWAITEIDLAEVAFAPRLEEKPSVGIAAYNGPQNTVISGEREAIERICANLKAAG 1840
WD40-rpts
Query 1841 IQTKKLVTSYGFHSPLMEPILAEFRQVAATVTYNAPQIDIISNVTGQLIGEAINPEYWCDHLISSVQFAKSIQTLHTADY 1920
WD40-rpts
Query 1921 EIFVEIGPKPILLGMGSKCLLGKGLWLASLRQGREDWQQILESLGELYVHGVQVEWSGFDRDYFRRRVQLPTYPFQRKRY 2000
WD40-rpts
Query 2001 WIDAPVSTSDNKFDTQKSLPSQLSTSQFDTEIAPPLKALQPKVDTTPQIKRLDLIVSKLHSYIVNLLKAEPSEVDFYAPF 2080
WD40-rpts
Query 2081 LEIGADSLMLIDAINYIDITYRIKITISQLFEQLTTIYAVASYIDQNLLPEPIFVDVQLPEPVYQTQPPTPQSPPLAFVE 2160
WD40-rpts
Query 2161 SNGNGHSHTQQPTLKSTVQQTAGETAVERIMLQQLQVMSQVMSQQLDVLRATGNVLSSNGNSHLASSPPTPQNQVVKETG 2240
WD40-rpts
Query 2241 IAINQVQSNQTVTKNFSPIEPPPPREINQPQQQHLKTLISNYTQKTQSSKQYAQTYRSFLADSRAVAGFRPSTKEMVYPI 2320
WD40-rpts
Query 2321 IGERAKGARCWDIDGNEYVDITMGFGVLLFGHAAPFITAAVDEHLQQGIQIGPQANYAGEVAALISELTGMERVTFCNSG 2400
WD40-rpts
Query 2401 TEAVMTALRLARTKTGRSKIAIFAGSYHGHFDGILAKESLDGLSTVPIAPGITANAVEDVLVLDYGEPKSLEILQAHAAE 2480
WD40-rpts
Query 2481 LAAVLVEPVQGRNPDLQPREFLQQLRQFTAVAGVALIFDEVLVGFRIHLGGAQAWFGIEADIVTYGKIVGGSIPIGVVAG 2560
WD40-rpts
Query 2561 KASYMNGIDGGLWNYGDASYPQVEKTFFAGTFNKNHLGMAVARAVLKYLKSQGPALQQHLNQRTSDLAIALNTYFEQEEV 2640
WD40-rpts
Query 2641 PIKIVYFGSLFRFAFSGNFDLLFYHLIYKGVYIWEGRNCFLSTAHTDEDIEYVIQAVKHSIEEMRAVGFIPKRSPKLSAG 2720
WD40-rpts
Query 2721 SNGNGTVKTTQNGVLTKPVVTESVPVLEAIAREGKLPLSLAQQRLWFLDQLEPNSAFYNIPAAVRLQGQLNVAILEQSFR 2800
WD40-rpts
Query 2801 EIIRRHEALRTNFITLDGQPHQVIHPNLNWQISVVDLQHLPVSKRENESQKIAIAEAQRPFNLETESLVRATLLVLSQTE 2880
WD40-rpts
Query 2881 YILQVTMHHIVSDGWSMSILIEEFTALYTAFSQGQPTPLVELPIQYVDFAVWQRKWLQGTVLQSQLTYWKKQLSGAATIL 2960
WD40-rpts
Query 2961 SLPTDRPRPTMQTVRGAHQPFALSFELTEALKALSKKEGVTLFMTVLAAYNILLYRYTGQADILVGSPNASRNRPEIQGL 3040
WD40-rpts
Query 3041 IGYFLNILLLRADMSGNPSLREFLKQVRKTALGAYAHQDVPVEELIEALQPVRDLSYTPLFQVMFILDSATPISEMQLPG 3120
WD40-rpts
Query 3121 VTWSSMTVENYTSKLDLTLTLENTAQGLVGEWEYNTDLFEAATITRMAEHFRNLLEGMVANPEQRIAELPLLAAWERQQL 3200
WD40-rpts
Query 3201 LVEWNNTQREYPHKCIHQLFEEQVELTPNAVAVVFGNQRLTYQELNSRANQLAHYLQELEIKPDTLIGICLERSLDIFVG 3280
WD40-rpts
Query 3281 ILGILKTGAAYVPLDPDYPQERLDYMFSDSQVSILLTAKKLVTQIPRHSAQLVYLDADWDVIATKSQQNLASEVKPENLA 3360
WD40-rpts
Query 3361 YVIYTSGSTGRPKGVMVPHRSLVNAYFGWEQAYELRTKTSSHLQMANFSFDVFTGDLVRGLCSGAKLVLCPREWLLTPEL 3440
WD40-rpts
Query 3441 LYKLMQEEKVDCAEFVPAVIRNLIAYLEKTKQNLDFMRVLAVGSDSWYVKEYEEFQRFCGLETRLINSYGVSEATIDSCY 3520
WD40-rpts
Query 3521 FESTNVKLPVEALVPIGKPFPNVQIYILDSDLQPVPIGVLGELYIGGAGLAHGYLNRPDLTQERFIANPLSNEPTSRLYK 3600
WD40-rpts
Query 3601 TGDLARFLADGNIEFLGRIDNQVKIRGFRIELAEIEAVLRQYPTVSQTVAMAREDIPGDKRLIAYVVGNQESVPVISDLR 3680
WD40-rpts
Query 3681 RFLKEKLPEYMIPAAFMVLQTIPLTPNGKVNYRELPAPEISRAGLEASFIAPRNPIEEILAQIWVDVLGVKQVGIHDNFF 3760
WD40-rpts
Query 3761 ELGGHSLIATQLISRIRTALKVELPLRSLFEASTVADLAERIALQQDAPHLNAPSLQSVVRDGQLSLSFAQQRLWFLNQL 3840
WD40-rpts
Query 3841 EPNSALYNIAGTARLQGELNVIALEQSLGEIIRRHESLRTNFITQEDGQAVQIIRPDAAFTMPVVDLRQLSASEQEIEIQ 3920
WD40-rpts
Query 3921 RLATVEAQQAFDLANQLLIRATLLVLSKTEHILLFCMHHIVSDGWSMGVFVQETAAIYGAFSQGQPTPLPELAIQYVDFA 4000
WD40-rpts
Query 4001 VWQRQLLQGEIKESQLAYWQQHLAGATALLELPTDRPRPAVQTFRGANQSFVLSFELTGSLILLSRQEGVTLFMMLLAAY 4080
WD40-rpts
Query 4081 DTLLYRYTGQTDILVGSAIANRNHNEIEGLIGFFVNTLVFRTDVAGNPSFRELLNRVREVALGAYSHQDLPFELLVETLQ 4160
WD40-rpts
Query 4161 PERNLSYTPLFQVAFVLQNAPMSEIELPGLTLSSMTPDNKTAKFDLTLTLENTATGLMGVWEYNTDLFEASTIERMTGHF 4240
WD40-rpts
Query 4241 QTLLESVVIQPEQRIGELPLLTAKEQYQLLEEWNHTQKDYLGNICIHQFFEMQVERTPDAVALVFENQQLTYRELNQQAN 4320
WD40-rpts
Query 4321 HLAHYLRTLGIRVDVLVGLCVERSLEMLVGLLGILKAGGAYVPIDPEYPQERISHILSDSQVSLLLTQHRLVARLPEHQA 4400
WD40-rpts
Query 4401 TLVVIDESWEQIIQHSQENPISGVKDSDLVNVIYTSGSTGKPKGVMVKHSGLCNLAQAQIDLFDLLPSSRILQFASFSFD 4480
WD40-rpts
Query 4481 ASIWEVVMALGSGARLYLGTKESLLPGLELIELLRDYGITHITLPPSALAVLPQAELPALQNIIVAGEACAPDLIKQWSV 4560
WD40-rpts
Query 4561 GRRFFNAYGPTETTVCATVAECGNGERSDKPPIGRPIPNTQAYILDSYLQPVPIGVPGELHIGGAGVAQGYLNRPELTTE 4640
WD40-rpts
Query 4641 KFILNPFEDSAALASPRASAEGSRLYKTGDLARYLPDGNIEYLGRIDNQVKVRGFRIELGEIEVILSQHPAALQVAVIAR 4720
WD40-rpts
Query 4721 EDVPGDKRLVAYLVLNQEEAPTVNDLRQFLKQKLPNYMMPSAFVFLETLPITPNGKVDRRALPTPDLRCELEVSFVAPTT 4800
WD40-rpts
Query 4801 SIEETLGKIWADVLRVEQVGIHDNFFDLGGDSILSLQIIARANLAGLQLIPKQLFAHQTIAELAAVVGTTKKIQAEQGLV 4880
WD40-rpts
Query 4881 TGALLLTPIQEWFFEQNLPEPHHFNQSILLLVPPDVQSELLEQVLQKLLLHHDALRLRFIPDGGDWQQVNDGLEAKVPLN 4960
WD40-rpts
Query 4961 VIDLSTIPAEEQSVALENSGSALQASLNLSTGPLMRVALFKFSNNQPYRLLVILHHLIVDGVSWRILLEDLFSAYQQLSR 5040
WD40-rpts
Query 5041 GEMMALPPKTSSFKDWGHRLREYARSLALTSELNYWMQPNFNFTSLPTDYPVSKDANNIAATAQVSRSLSLEETSALLQE 5120
WD40-rpts
Query 5121 VPAAYNTQINDVLLTALLQSFAQWTGSSSLLIDIEGHGREELFDDLDLSRTVGWFTSLFPVRLQLEQTNHPGNILKSVKE 5200
WD40-rpts
Query 5201 QLRQLPNRGIGYGILRYLSPYAEQLKALPQAEVSFNYLGQLGQKSSAADTWKLAQESGGVEHNSLENRNYLLDINVLTIN 5280
WD40-rpts
Query 5281 GKLQINWTYSQKIHQLKTVECLADWFMNALKTLINHCQSPDVGGYTSSDFPEVSLSQEEIDNLNLMFAFDPS 5352
WD40-rpts
 1 WD40-repeats found in QUERY=gi_186683276_ref_YP_001866472.1_ (Len=5352): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 12 423-462 3.09 242.48 0.03310 15.0% 9.02Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 423-462 HAYLADTAEGPFLRTGDLGFLKDGQLFITGRLKDVVIIRG WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |