Input parameters:

  Query = ZK930.1 (Len=1354)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK930.1, Len=1354):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNINSLFTTNPSEILPVEVYLNDLSCDAVENLGSTRFMKVARGRTHEGVFVYKVFVRQDLASLDPFPQRIIDIRKALMK 80  
WD40-rpts                                                                                      

Query       81 SPNCCPIKKVLVKQKYAVMVRAFQKHTLFDRLSTRPFVVEAEKMWYIFLLFKALSQCETAGVCHGDLKSQNVLISSTNWL 160 
WD40-rpts                                                                                      

Query      161 QITDFAPFKPCFLTHDNPSSFTFFFDTSRRQSCYIAPERFISATEYDEKLRDGQDEWLFGSLTPKMDMFSAGCIVFELLC 240 
WD40-rpts                                                                                      

Query      241 DRPPFTYSSLCEYRSMNDADAGNMLLRLIQDVPAPYRPLLRLLLNRDPSFRISANAVLTGAALKFPHILESFLFKYLDRF 320 
WD40-rpts                                                                                      

Query      321 RPLYGTSTSSDPSTDDFSQALEFSYLEPDDVITKLKREKQLWWARLSENDESKSFAFLFVSLITANLRALRTIQGKTDAI 400 
WD40-rpts                                                                                      

Query      401 RMLVELSTISDSSVAIDRILPYFVHLWMDPETQVRATAVTAVAELLAPIQPKTYEESLVFVDYLFPHLNSMSNDSIDSPQ 480 
WD40-rpts                                                                                      

Query      481 HVLFAIATSLGQFADTAYRFYMAGREIRQATMYDDEVSTAGEQQQNDDAGALLHGVSAMFSALCSKEPMVKRCLVESKSL 560 
WD40-rpts                                                                                      

Query      561 ILLYHFFIKIGNDDTLLRFLCTFLNAKTEWRLRAAFFDSLPVCVQKRSEGMVPLLQLGLQDGEEHVVVRALGCIHILIKN 640 
WD40-rpts                                                                                      

Query      641 ENLDKMSVKKLLDDVLPFLVHPNDWIRSTVCDILLAIDCQWHNAEVHVKLIPLVSPFVEESKRGVLTLKSKPVLMSQLVD 720 
WD40-rpts                                                                                      

Query      721 PIPRTTFNQIIDQSLENTKQITMLLEIHFQTGKPFEAGAGWFNTIFPKIKTETKAGVVEHNDLKAALEARKRLTASVYSF 800 
WD40-rpts                                                                                      

Query      801 RKLFERMAETRNTAGMEIYLTRQLGTIDLSSIAHSRVRRKEFTYGGDESAMSSNSKHLTAINIPNHSTERRDTLLLAGEV 880 
WD40-rpts                                                                                      

Query      881 VIEEERTVTNTPAPYSPVKNTTFDNQVNEMLAHLNELHMRNVNCRPKRPLAASASHPVLSASPSAGSLGSSSNNNVKGII 960 
WD40-rpts                                                                                      

Query      961 ITHLHEHSGKITKLCANRESDLFLSGSTDGTVKVWKTRSVLGEGYGSARSEDTWIPTETSREKVNSVGWNDQFACSATND 1040
WD40-rpts         (______________WD 1_____________)                                            

Query     1041 GFVRWADVGQGSARVATQVRIPDAEGPPVYLHCNGPMAIVRTHHGVLYGIDLRVGASEGPLKRHDIWRKKFQESHGLVTS 1120
WD40-rpts                                                                                      

Query     1121 SAIDPWQQSWMVIGNNSGQKNLVLYDLRFKEEVLRWESPHQNTQPNRVWANPVSRQECPEVFVGFSMHGEISTYELSAQP 1200
WD40-rpts                                                                                      

Query     1201 LRKRVFWTGGAPILSYSAASNDARKQDSLATRSLCVCEKTGVVYTGDTRGAIRKWNPTRAVGCEIISAPPKGRTAYRTIF 1280
WD40-rpts                                                                                      

Query     1281 EENDTSTAPSGASTDPFVIYERTVLDTEAKENQKVVPLDSKPSTYHRTPITDMMLLNSELLVSSGYDGVIKIWK 1354
WD40-rpts                                                                                

1 WD40-repeats found in QUERY=ZK930.1 (Len=1354):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   964-996      5.58  345.14  0.00139       30.0%     30.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  964-996    LHEHSGKITKLCANRESDLFLSGSTDGTVKVWK

   WD40 Template    LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD