Input parameters:

  Query = ZK622.2 (Len=408)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK622.2, Len=408):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTSVSKISIISTESLKNVSSKISLSKGDYENTPFIHVEQAIWFLRLDFVNSDGWARKINNAITGIFLISSMYYLGFMAK 80  
WD40-rpts                                                                                      

Query       81 TMFYKSSFYVLDMSLQLLSMIWHFESILSMIFLVYWQYSGQLESLKAKLEICQNFQGLRSKTRKFYDGARWFIILYVITT 160 
WD40-rpts                                                                                      

Query      161 LFNVVYSGKYYFEKSHSVWALQISEMFYYKELRFIMSIISSYMYSVWLTTTYVFVTYANAAYFEISFFNKEIRNLAGTRA 240 
WD40-rpts                                                               (______________________

Query      241 YIKGELIKKVETFRLLSEAITELDSVFRLYTFAMLATVIPILIFTLMMLNQHLSSFTDFLICMPFILFCTCAFCSVTIAP 320 
WD40-rpts      _____________________________________________________WD 1_______________________

Query      321 ARVHEECQNLKHSLCRNSNIWQPYDVEVYQLATTLASHCEQDGLGISIWGFATLSRPLILGTLSATAMMMSLLTDLKPER 400 
WD40-rpts      ____________________________________________________)                           

Query      401 IVEVEVEA 408 
WD40-rpts              

1 WD40-repeats found in QUERY=ZK622.2 (Len=408):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   218-373      2.95  236.38  0.03987       22.5%     20.03

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  218-373    ANAAYFEISFFNKEIRNLAGTRAYIKGELIKKVETFRLLSEAITELDSVFRLYTFAMLATVIPILIFTLMMLNQHLSSFTDFLICMPFILFCTCAFCSVTIAPARVHEECQNLKHSLCRNSNIWQPYDVEVYQLATTLASHCEQDGLGISIWGFAT

   WD40 Template    TGECLRT----------LSGHT-------------------------------------------------------S----------------GVTSVSFSPDGK--------------RLVSGSED------------------GTIKVWD---