Input parameters:

  Query = ZK520.3a (Len=1383)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK520.3a, Len=1383):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLKVIPCTLTKNQEVFKCVSAQLQYRRGEEEHGSGPIIHRWRPNGHTVAVACANNTVIYYDKKGNVIDALNPTGKLIDI 80  
WD40-rpts                                (_______________WD 1_______________)(_________________

Query       81 AWDKEGDVLAIAVANTGTIYLWDVNSRNTDTVESGATSSKELPTCLAWSPSTPTLVIGNNAGNIVVYNHRTSRRIAVMGK 160 
WD40-rpts      _WD 2_________________)        (________________WD 3_______________)   (________

Query      161 HQRSVTQITVTPEDYVISCSDDNTLSVTTLEGTTVSTTTTNGEPTNMDYGSVNGKGGSGVTMVSVVIGKKILMLAHYNAL 240 
WD40-rpts      ________WD 4________________)                                                   

Query      241 DEPVNLQFQEKYGNIHSYRWFNDGYILIGFDRGYIISISAHNNEIGSELVSFLEYRGYLASIAVSTSFNKLLTIGDNMVK 320 
WD40-rpts       (_________________WD 5________________)     (________________WD 6______________

Query      321 VRDLDELTTVTMLTEIETEKNLSEIEVTEDGQLVAVSSQSGVLSIFVTKMPTLAASYNNSICYLTNLTQVTVVAEVEKKG 400 
WD40-rpts      __)(___________________WD 7___________________) (________________WD 8___________

Query      401 SSTLELNIEPTVMGLGPLNLAVANNNTVFFYDYHTPAQMQAAQQLQSTQSAAEKPTIVAAEPINRVEYLSTVTNIQLNYM 480 
WD40-rpts      ____)                                                                           

Query      481 YAAVNFGSRLRLHRIRNSEDNVSIEFPEANRNATLYSYALTENFLIFTTSNNYIVYFSLSEWAIVSEYRHVVPVRSIFPH 560 
WD40-rpts                         (_________________WD 9________________)(__________________WD1

Query      561 PTNVVCCCFDDRLEAMIYSAVDDEVFRLPSVGSSAHYKGAIWETFTIDKNTFAVFDSQNIYVFLLSKQHIQGESVIYVSA 640 
WD40-rpts      0_________________)                                                             

Query      641 TRLPHAYVPLSLNKGIVTCLMSNGKLSSVLLDSHKTESVISDKSETVIDDILTRSLLMHRWSTAWKICIHSNDGSHWNQF 720 
WD40-rpts                                                                                      

Query      721 AMAALLDSDVGMAIKIFREIGDAAMVTALELIETIEEKNLLHAQIYTILSRYDDAEQLYLESSRPMEALNMRRDLLEWPK 800 
WD40-rpts                                                                                      

Query      801 ALVLAETMNPKEIPYLSKEYAQELELTGDHANSLANYEKGVMENPQNLPELQEHNEICQSGIARMAIKTGDLRRGVQLAK 880 
WD40-rpts                                                                                      

Query      881 QLEGRVVKRDCAIILEQMKQYTEAAQLYEVGLFYDRAAAVCLKANAWAKVGELLDHVKSPKIHIQYGKIMEKEKKYKVAV 960 
WD40-rpts                                                                                      

Query      961 KCYETGRDYDNQVRLLLDPLNDPDEAVRVVRESRSIEGAKLVAKFFVKLGDYNSAIQFLVMSQCVQEAFELAEKNNAVRE 1040
WD40-rpts                                                                                      

Query     1041 YAKAIEQHGNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNAINLLFKNGDDENCVALAVDCGIKSKDKTLNNKLVKFL 1120
WD40-rpts                                                                                      

Query     1121 LGEDGNVKDPAQLFRLYVGLGRTKDAAQTAVVVAQIHQAKGNYRIARDLLFQMHQQLREKMMRIPLDMNKSLMAIHSYII 1200
WD40-rpts                                                                                      

Query     1201 VKALINRKETLLAARLLIRTCGEIQRFPTHVVPILTSSVVICTQANLKKSAHKFAAQLMTPEYRPKIHEKYKKKIEDIVR 1280
WD40-rpts                                                                                      

Query     1281 KGGNQKDLVEENTPCPICDDLMPAYAMSCDNCKSLVPYCILTGRHIVASDFSRCPHCEMPGFYSEFRKLSILNENCYMCG 1360
WD40-rpts                                                                                      

Query     1361 GDLKGAIPEDAKAYLEKMEQDYK 1383
WD40-rpts                             

10 WD40-repeats found in QUERY=ZK520.3a (Len=1383):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    27-62       6.59  386.94  0.00038       20.0%     40.59
  WD 2:  Seg  5    63-103      5.07  323.94  0.00268       20.0%     55.63
  WD 3:  Seg 10   112-148      5.60  345.84  0.00136       22.5%     40.80
  WD 4:  Seg 13   152-189      5.81  354.66  0.00103       22.5%     54.42
  WD 5:  Seg 21   242-280      4.59  304.09  0.00496       12.5%     50.41
  WD 6:  Seg 25   286-323      4.75  310.78  0.00403       22.5%     54.91
  WD 7:  Seg 29   324-367      4.77  311.88  0.00389       15.0%     53.15
  WD 8:  Seg 33   369-405      2.87  233.34  0.04373       10.0%     34.19
  WD 9:  Seg 42   500-538      2.97  237.26  0.03881       10.0%     48.40
  WD10:  Seg 46   539-579      3.38  254.09  0.02320       12.5%     51.23

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-62     ---------RRGEEEHGSGPIIHRWRPNGHTVAVA-CANNTVIYYD
   WD 2   63-103    KKG-N----VIDALNPTGKLIDIAWDKEGDVLAIAVANTGTIYLWD
   WD 3  112-148    ----V----ESGATSSKELPTCLAWSPSTPTLVIG-NNAGNIVVYN
   WD 4  152-189    -SR-R----IAVMGKHQRSVTQITVTPED-YVISC-SDDNTLSVTT
   WD 5  242-280    -EP-V----NLQFQEKYGNIHSYRWFNDGYILIGF-DRGYIISISA
   WD 6  286-323    -GS-E----LVSFLEYRGYLASIAVSTSFNKLLTI-G-DNMVKVRD
   WD 7  324-367    LDE-LTTVTMLTEIETEKNLSEIEVTEDGQLVAVS-SQSGVLSIFV
   WD 8  369-405    ----K----MPTLAASYNNSICYLTNLTQVTVVAE-VEKKGSSTLE
   WD 9  500-538    -DN-V----SIEFPEANRNATLYSYALTENFLIFT-TSNNYIVYFS
   WD10  539-579    LSEWA----IVSEYRHVVPVRSIFPHPTNVVCCCF-DDRLEAMIYS

   WD40 Template    TGE-C----LRTLSGHTSGVTSVSFSPDGKRLVSG-SEDGTIKVWD