Input parameters:

  Query = ZK430.7 (Len=444)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK430.7, Len=444):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKIKVISRNPNTYQRETTDKRNKIVRNFNTPADPFRSQVEYTRALNATKLERVFAKPFVASLDGHVDGVQVLAKHPNRPS 80  
WD40-rpts                   (_________________WD 1________________)   (_________________WD 2___

Query       81 TVFSGARDGQVKIWNLASRECQATLDAHRGLVNDISIDNNNGENFVTVGQDNQLKYWKIEGQQKTPAHSIAMDGIVYGVS 160 
WD40-rpts      ______________)   (_________________WD 3_________________)       (______________

Query      161 HLSFSSDFVTCGEDISVWKPYRETPLRSYNLGTDTIHTCRANPVEENVIVGARSDRSIYVLDTRQDVPLKKVTMKMRPNK 240 
WD40-rpts      WD 4______________)   (_________________WD 5_________________)   (______________

Query      241 ISWNPMEAYNFTVASEDYSLYTFDMRYMEHPVQSHQGFTSAVLDVDYSPTGQEFVAAGYDRSIRLFKARDMTSRDVYYTK 320 
WD40-rpts      ___WD 6________________)    (_________________WD 7________________)(____________

Query      321 RMASVLSVLWSADSKFVLSGSNEMNIRVWKANAAEKLGPLTKREKQAFAYNEKLRDTYKNHPEVRRIAKHRNVPRHIFTA 400 
WD40-rpts      _______WD 8__________________)   (_________________WD 9________________)(_______

Query      401 AKEHKLIRDARGRRDFRRAKAAGLDEEESYLPQTQKIMVGDAEM 444 
WD40-rpts      __________WD10_________________)            

10 WD40-repeats found in QUERY=ZK430.7 (Len=444):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    14-52       4.67  307.38  0.00448        7.5%     34.76
  WD 2:  Seg  5    56-95       8.47  464.36  3.4e-05       30.0%     52.44
  WD 3:  Seg  9    99-138      8.25  455.56  4.5e-05       30.0%     55.00
  WD 4:  Seg 13   146-179      4.02  280.72  0.01022       25.0%     37.35
  WD 5:  Seg 17   183-222      6.84  397.01  0.00028       22.5%     55.02
  WD 6:  Seg 21   226-264      5.39  337.15  0.00178       17.5%     54.25
  WD 7:  Seg 25   269-307      8.83  479.59  2.1e-05       27.5%     51.74
  WD 8:  Seg 29   308-350      8.13  450.56  5.3e-05       30.0%     54.75
  WD 9:  Seg 33   354-392      4.88  316.26  0.00340       10.0%     16.18
  WD10:  Seg 36   393-432      3.55  261.25  0.01862       10.0%     32.47

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-52     QRETT-D---KRNKIVRNFNTPA-DP-F-R-SQVEYTRALNATKLER
   WD 2   56-95     -KPFVAS---LDGHVDGVQVLAK-HP-N-RPSTVFSGARDGQVKIWN
   WD 3   99-138    -RECQAT---LDAHRGLVNDISIDNN-N-G-ENFVTVGQDNQLKYWK
   WD 4  146-179    -PAHSIA---MDGIVYGVSHLSF-SS-D-F------VTCGEDISVWK
   WD 5  183-222    -ETPLRS---YNLGTDTIHTCRA-NP-VEE-NVIVGARSDRSIYVLD
   WD 6  226-264    -DVPLKK---VTMKMR-PNKISW-NPME-A-YNFTVASEDYSLYTFD
   WD 7  269-307    -EHPVQS---HQGFTSAVLDVDY-SP-T-G-QEFVAAGYDRSIRLFK
   WD 8  308-350    ARDMTSRDVYYTKRMASVLSVLW-SA-D-S-KFVLSGSNEMNIRVWK
   WD 9  354-392    -AEKLGP---LTKREKQAFAYNE-KL-R-D-TYKNHPEVRRIAKHRN
   WD10  393-432    VPRHIFT---AAKEHKLIRDARG-RR-D-F-RRAKAAGLDEEESYLP

   WD40 Template    TGECLRT---LSGHTSGVTSVSF-SP-D-G-KRLVSGSEDGTIKVWD