WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ZK270.2e [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ZK270.2e (Len=4541) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ZK270.2e, Len=4541): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MESTETLGSEQMGTDRDPGDQKHPTTSQQPRDSKMQLAKVLLPDGVQKEFEVNKNSEGEALFRQVTRDLSIEEREYFSLC 80
WD40-rpts
Query 81 FYDKDEGTRHWLYNDKNIAKQIKGLPWEFSFEVKFYPTTPTTIVDDHARYYVFLQLRRDLLTGRLPATADTHSLLGSFVA 160
WD40-rpts
Query 161 QIEFGDAPAEMTDAYEQFIVASKLVPSAQANPETYKKIVDLHREMRGQTPSEAENQFLDHCKHLALYGIHLFKAISDKDK 240
WD40-rpts
Query 241 KPVDVGIGAAGINIYQDEQKTHSFSWQNIIKIGYRRTYFSIKLKAGTVEKNEKTLYFKLPNHVAAKRTWKCAVEHHTFFR 320
WD40-rpts
Query 321 LIQPEDKTHKSFFNFGSQRFRYQGRTQFQTKIASQMFDKPSTVDRAPSAMSQPIATAENQKLQTLNLTDSELEQRQFERY 400
WD40-rpts
Query 401 RRALTPKSYTSSRQDDDAVSTATFAKYSRPSTLLVVSTSGHHQQSPHELSYSPRGDDSSNYSSAAYYMSERSSLRTPSSA 480
WD40-rpts
Query 481 YYPPSEYTSPTSPVYFEGQHHGEYHVQMRQTASTSATGPSNSGARRNLFGRASDARSSQASRDSVRLVSFHEPVDPNEPI 560
WD40-rpts
Query 561 PNTYPYSELPQIPIERIVHVYHEGHYDRLSPRRQQRPELPYGFGNYTPRNGVSHVDNLQPDGEMDQQPIRFYVDVRHSGA 640
WD40-rpts
Query 641 SRRNLAKRLSHPGKEDIKEQIDPKDYYFSASLASDPIHRTELSREVQPANIQQYTRRYHHGDSIHKPDTPQYRLITHVHP 720
WD40-rpts
Query 721 LAVTNRDGRDGQSSSNLNATISQREQVVSTKVRRESPDADRRVRLSASVDRSGNLTDTTEEMTRSTNEAATPTTVVTTRI 800
WD40-rpts
Query 801 VEKKGKGKKNNQKIPPSSNKTDHASFEGQEKRSRFGGFFTKKTSQTLSGYPESTSQFTGELDATHRDDDLEPSTFSHSNK 880
WD40-rpts
Query 881 SQQYSSKQDKTIITSVESKSDSGNKKRLMAVESPEVPKKYRLIARIRHEGDEDVVEKPEKYSFVTDSHSGMLEETYRQKE 960
WD40-rpts
Query 961 LDQIPISSHAAVYHHGKSWSIQRQSTLSQDRSKISSLGADDANLSKKKEVRLIARIESKTEEVAHKKHKKEGSSVFGFFN 1040
WD40-rpts (____________
Query 1041 RPTKLPAGTEYPEKSNVFTGDLDTTGRTSDLEQHPFQHGTHPAYSPKNVEAYQPSENSNGESKTDIPAAYGFPSTSYDGP 1120
WD40-rpts _______WD 1__________________)
Query 1121 LETTSLERDLQHVTIAAHSNVYHHGDSSRIEKHASPVATPEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEI 1200
WD40-rpts
Query 1201 VDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDFEGTSFEHGEHPAYSPKQTVIEA 1280
WD40-rpts
Query 1281 IETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHANVYHHGDSSRIEKHASPV 1360
WD40-rpts
Query 1361 ATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTG 1440
WD40-rpts
Query 1441 YPETSEAYTGELDTTDRTHDLEGTSFEHGEHPAYSPKQTVIEAIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIAT 1520
WD40-rpts
Query 1521 TLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATPEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRT 1600
WD40-rpts
Query 1601 EPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTEELDTTDRIHDLEGTSFEHGEHSAYSPK 1680
WD40-rpts
Query 1681 QTVIETIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHANVYHHGDSSRIE 1760
WD40-rpts
Query 1761 KHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTK 1840
WD40-rpts
Query 1841 TTKTTGYPETSEAYTGELDTTDRIHDLEGTSFEHGEHPAYSPKQTVIETIETPAEPEKKRYRLIARFRHEGDEDVVEKPD 1920
WD40-rpts
Query 1921 PYQIATTLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRL 2000
WD40-rpts
Query 2001 IARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDLEGTSFEHGEH 2080
WD40-rpts
Query 2081 PAYSPKQTVIEAIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHANVYHHG 2160
WD40-rpts
Query 2161 DSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGF 2240
WD40-rpts
Query 2241 FSKTTKTTKTTGYPETSEAYTGELDTTDRIHDLEGTSFEHGEHPAYSPKQTVIETIETPAEPEKKRYRLIARFRHEGDED 2320
WD40-rpts
Query 2321 VVEKPDPYQIATTLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPE 2400
WD40-rpts
Query 2401 KKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDLEGTS 2480
WD40-rpts
Query 2481 FEHGEHPAYSPKQTVIEAIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHA 2560
WD40-rpts
Query 2561 NVYHHGDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSK 2640
WD40-rpts
Query 2641 LPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRIHDLEGTSFEHGEHPAYSPKQTVIEAIETPAEPEKKRYRLIARFR 2720
WD40-rpts
Query 2721 HEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATPEKKQKKVKSPKKEKVD 2800
WD40-rpts
Query 2801 VPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRIH 2880
WD40-rpts
Query 2881 DLEGTSFEHGEHPAYSPKQTVIETIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHT 2960
WD40-rpts
Query 2961 PIADHANVYHHGDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKK 3040
WD40-rpts
Query 3041 GDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDLEGTSFEHGEHPAYSPKQTVIEAIETPAEPEKKRYR 3120
WD40-rpts
Query 3121 LIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATLEKKQKKVKSP 3200
WD40-rpts
Query 3201 KKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELD 3280
WD40-rpts
Query 3281 TTDRTHDLEGTSFEHGEHPAFEASSTSITIEAFDPSHEKVIKKPSRFHWFSRWRHEGDEDVVEKPEGYILSSEIYEGPYD 3360
WD40-rpts
Query 3361 NMRPIGELELTPILDHSQVYHNGESGKLEKRSSKEKRIKTPSPERVEPSEIKLVARIQPLEHVEDSEISEKLSPVKDRSR 3440
WD40-rpts
Query 3441 APSFSMFHRQSKQRGYPEISPLYEGNLDVTGRAAEVENTPIEVRSVPEYHPKQEVSAQHPESSQPNRFYRLIARWRHEGD 3520
WD40-rpts
Query 3521 EDEIEKPDAYKFVTEVYEGPLDDIRPVVELAQDPISDHSQVYHNGESWKAEKNIKPPKPVRNTKKGLSPEPIESEVHEIR 3600
WD40-rpts
Query 3601 LLTRVASSSEEPEEVDVIPAESTPVKPFRLRFLSIGKKSPTSPDSEFPECSPQYDGPVDLTSRSDELEVMPYLHGSVPPY 3680
WD40-rpts
Query 3681 SPKFTPVKKVDKADEERKKYTVIYRFRHEGEEDFADKPEAYGFSSDVYTGSLNEISRSSELEHAAIHDHSQVYHDGLSYK 3760
WD40-rpts
Query 3761 IDNKQKKSKDRTELEEPKTSRLVARVLPQQEASDSGSPKKDDKDKGFRFRFFSKASPKSSGYPEVSPTFEGPIDVTGRVE 3840
WD40-rpts
Query 3841 SLEHVPLQSREFPTYSPRKSQEKPSEKSSERTVEPKRYHLIARIRHEGDEETVENPDTYGFASTSYDGPLEETSKSVDVE 3920
WD40-rpts
Query 3921 ETPISVYSNVYHHGESIRVEKRQRKAKISAEPEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSGPLETTDRDLDLEN 4000
WD40-rpts
Query 4001 IPLSIPVHGSSDQHARKYRLIARIRHAGDEDEVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYHSGSS 4080
WD40-rpts
Query 4081 GGLIWNLLKNRNSRASKDMDEPKRKRKDQKDQKDIKLIARVLPMKKTPEKSDRFEKATKEEPLREAELVRSTQSEAQGNI 4160
WD40-rpts
Query 4161 STVSYIPSSLTYDVPRPARIEGYTYGGDCYVEIRHERRAEVHLEPVYVLQETNARSHAYLSTATAVFSGASTSAAAADSG 4240
WD40-rpts
Query 4241 ANSSTNTTSHSLVLPSFAASVSEDETGIHHFSWTPLHMSPQPEKMSFLARLGFKRDKSNKKDKKKRKKGENETSGETSDS 4320
WD40-rpts
Query 4321 EHDEKREFAIVEFEPESGQPYTTVSTWQETSDLPEQVEVYTDENGRQITRTVKSSQVKHTVQTQSFQNYIVDGDQVPVGV 4400
WD40-rpts
Query 4401 VDVERSREQLTPLGQKASSSTSSDVQNGGGENGGIVETQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKSVTQGNRTIE 4480
WD40-rpts
Query 4481 TITYKTEKDGIVETHVEHRVTIHSDGDIDHDAELSQAILEATQMNPDMVVEKIEVRQETTQ 4541
WD40-rpts
 1 WD40-repeats found in QUERY=ZK270.2e (Len=4541): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 28 1028-1070 2.92 235.08 0.04147 17.5% -11.92Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1028-1070 HKKEGSSVFGFFNRPTKLPAGTEYPEKSNVFTGDLDTTGRTSD WD40 Template TGECLRTLSGHTSGVTSVSFS---PDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |