WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ZK270.2a [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ZK270.2a (Len=4530) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ZK270.2a, Len=4530): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGTDRDPGDQKHPTTSQQPRDSKMQLAKVLLPDGVQKEFEVNKNSEGEALFRQVTRDLSIEEREYFSLCFYDKDEGTRHW 80
WD40-rpts
Query 81 LYNDKNIAKQIKGLPWEFSFEVKFYPTTPTTIVDDHARYYVFLQLRRDLLTGRLPATADTHSLLGSFVAQIEFGDAPAEM 160
WD40-rpts
Query 161 TDAYEQFIVASKLVPSAQANPETYKKIVDLHREMRGQTPSEAENQFLDHCKHLALYGIHLFKAISDKDKKPVDVGIGAAG 240
WD40-rpts
Query 241 INIYQDEQKTHSFSWQNIIKIGYRRTYFSIKLKAGTVEKNEKTLYFKLPNHVAAKRTWKCAVEHHTFFRLIQPEDKTHKS 320
WD40-rpts
Query 321 FFNFGSQRFRYQGRTQFQTKIASQMFDKPSTVDRAPSAMSQPIATAENQKLQTLNLTDSELEQRQFERYRRALTPKSYTS 400
WD40-rpts
Query 401 SRQDDDAVSTATFAKYSRPSTLLVVSTSGHHQQSPHELSYSPRGDDSSNYSSAAYYMSERSSLRTPSSAYYPPSEYTSPT 480
WD40-rpts
Query 481 SPVYFEGQHHGEYHVQMRQTASTSATGPSNSGARRNLFGRASDARSSQASRDSVRLVSFHEPVDPNEPIPNTYPYSELPQ 560
WD40-rpts
Query 561 IPIERIVHVYHEGHYDRLSPRRQQRPELPYGFGNYTPRNGVSHVDNLQPDGEMDQQPIRFYVDVRHSGASRRNLAKRLSH 640
WD40-rpts
Query 641 PGKEDIKEQIDPKDYYFSASLASDPIHRTELSREVQPANIQQYTRRYHHGDSIHKPDTPQYRLITHVHPLAVTNRDGRDG 720
WD40-rpts
Query 721 QSSSNLNATISQREQVVSTKVRRESPDADRRVRLSASVDRSGNLTDTTEEMTRSTNEAATPTTVVTTRIVEKKGKGKKNN 800
WD40-rpts
Query 801 QKIPPSSNKTDHASFEGQEKRSRFGGFFTKKTSQTLSGYPESTSQFTGELDATHRDDDLEPSTFSHSNKSQQYSSKQDKT 880
WD40-rpts
Query 881 IITSVESKSDSGNKKRLMAVESPEVPKKYRLIARIRHEGDEDVVEKPEKYSFVTDSHSGMLEETYRQKELDQIPISSHAA 960
WD40-rpts
Query 961 VYHHGKSWSIQRQSTLSQDRSKISSLGADDANLSKKKEVRLIARIESKTEEVAHKKHKKEGSSVFGFFNRPTKLPAGTEY 1040
WD40-rpts (___________________WD 1
Query 1041 PEKSNVFTGDLDTTGRTSDLEQHPFQHGTHPAYSPKNVEAYQPSENSNGESKTDIPAAYGFPSTSYDGPLETTSLERDLQ 1120
WD40-rpts __________________)
Query 1121 HVTIAAHSNVYHHGDSSRIEKHASPVATPEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKE 1200
WD40-rpts
Query 1201 KKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDFEGTSFEHGEHPAYSPKQTVIEAIETPAEPEKKR 1280
WD40-rpts
Query 1281 YRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHANVYHHGDSSRIEKHASPVATLEKKQKKVK 1360
WD40-rpts
Query 1361 SPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGE 1440
WD40-rpts
Query 1441 LDTTDRTHDLEGTSFEHGEHPAYSPKQTVIEAIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEIS 1520
WD40-rpts
Query 1521 RETDLDHTPIADHANVYHHGDSSRIEKHASPVATPEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPV 1600
WD40-rpts
Query 1601 VKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTEELDTTDRIHDLEGTSFEHGEHSAYSPKQTVIETIETPA 1680
WD40-rpts
Query 1681 EPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHANVYHHGDSSRIEKHASPVATLEK 1760
WD40-rpts
Query 1761 KQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETS 1840
WD40-rpts
Query 1841 EAYTGELDTTDRIHDLEGTSFEHGEHPAYSPKQTVIETIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDG 1920
WD40-rpts
Query 1921 PLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAE 2000
WD40-rpts
Query 2001 IVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDLEGTSFEHGEHPAYSPKQTVIE 2080
WD40-rpts
Query 2081 AIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHANVYHHGDSSRIEKHASP 2160
WD40-rpts
Query 2161 VATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTT 2240
WD40-rpts
Query 2241 GYPETSEAYTGELDTTDRIHDLEGTSFEHGEHPAYSPKQTVIETIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIA 2320
WD40-rpts
Query 2321 TTLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVR 2400
WD40-rpts
Query 2401 TEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDLEGTSFEHGEHPAYSP 2480
WD40-rpts
Query 2481 KQTVIEAIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHAPIADHANVYHHGDSSRI 2560
WD40-rpts
Query 2561 EKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTT 2640
WD40-rpts
Query 2641 KTTKTTGYPETSEAYTGELDTTDRIHDLEGTSFEHGEHPAYSPKQTVIEAIETPAEPEKKRYRLIARFRHEGDEDVVEKP 2720
WD40-rpts
Query 2721 DPYQIATTLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATPEKKQKKVKSPKKEKVDVPAEPEKKEIR 2800
WD40-rpts
Query 2801 LIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRIHDLEGTSFEHGE 2880
WD40-rpts
Query 2881 HPAYSPKQTVIETIETPAEPEKKRYRLIARFRHEGDEDVVEKPDPYQIATTLYDGPLDEISRETDLDHTPIADHANVYHH 2960
WD40-rpts
Query 2961 GDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEPEKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFG 3040
WD40-rpts
Query 3041 FFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDLEGTSFEHGEHPAYSPKQTVIEAIETPAEPEKKRYRLIARFRHEGDE 3120
WD40-rpts
Query 3121 DVVEKPDPYQIATTLYDGPLDEISRETDLDHTPIADHANVYHHGDSSRIEKHASPVATLEKKQKKVKSPKKEKVDVPAEP 3200
WD40-rpts
Query 3201 EKKEIRLIARVRTEPEAEIVDVPVVKETKEKKGDSKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDLEGT 3280
WD40-rpts
Query 3281 SFEHGEHPAFEASSTSITIEAFDPSHEKVIKKPSRFHWFSRWRHEGDEDVVEKPEGYILSSEIYEGPYDNMRPIGELELT 3360
WD40-rpts
Query 3361 PILDHSQVYHNGESGKLEKRSSKEKRIKTPSPERVEPSEIKLVARIQPLEHVEDSEISEKLSPVKDRSRAPSFSMFHRQS 3440
WD40-rpts
Query 3441 KQRGYPEISPLYEGNLDVTGRAAEVENTPIEVRSVPEYHPKQEVSAQHPESSQPNRFYRLIARWRHEGDEDEIEKPDAYK 3520
WD40-rpts
Query 3521 FVTEVYEGPLDDIRPVVELAQDPISDHSQVYHNGESWKAEKNIKPPKPVRNTKKGLSPEPIESEVHEIRLLTRVASSSEE 3600
WD40-rpts
Query 3601 PEEVDVIPAESTPVKPFRLRFLSIGKKSPTSPDSEFPECSPQYDGPVDLTSRSDELEVMPYLHGSVPPYSPKFTPVKKVD 3680
WD40-rpts
Query 3681 KADEERKKYTVIYRFRHEGEEDFADKPEAYGFSSDVYTGSLNEISRSSELEHAAIHDHSQVYHDGLSYKIDNKQKKSKDR 3760
WD40-rpts
Query 3761 TELEEPKTSRLVARVLPQQEASDSGSPKKDDKDKGFRFRFFSKASPKSSGYPEVSPTFEGPIDVTGRVESLEHVPLQSRE 3840
WD40-rpts
Query 3841 FPTYSPRKSQEKPSEKSSERTVEPKRYHLIARIRHEGDEETVENPDTYGFASTSYDGPLEETSKSVDVEETPISVYSNVY 3920
WD40-rpts
Query 3921 HHGESIRVEKRQRKAKISAEPEKDDDQENVPPKSRFSFLRGGQKRVLSYPSTLYSGPLETTDRDLDLENIPLSIPVHGSS 4000
WD40-rpts
Query 4001 DQHARKYRLIARIRHAGDEDEVAAHKLHPVFYSFPAVQYSGILEKTALCKEVDEVPIGRFARVYHSGSSGGLIWNLLKNR 4080
WD40-rpts
Query 4081 NSRASKDMDEPKRKRKDQKDQKDIKLIARVLPMKKTPEKSDRFEKATKEEPLREAELVRSTQSEAQGNISTVSYIPSSLT 4160
WD40-rpts
Query 4161 YDVPRPARIEGYTYGGDCYVEIRHERRAEVHLEPVYVLQETNARSHAYLSTATAVFSGASTSAAAADSGANSSTNTTSHS 4240
WD40-rpts
Query 4241 LVLPSFAASVSEDETGIHHFSWTPLHMSPQPEKMSFLARLGFKRDKSNKKDKKKRKKGENETSGETSDSEHDEKREFAIV 4320
WD40-rpts
Query 4321 EFEPESGQPYTTVSTWQETSDLPEQVEVYTDENGRQITRTVKSSQVKHTVQTQSFQNYIVDGDQVPVGVVDVERSREQLT 4400
WD40-rpts
Query 4401 PLGQKASSSTSSDVQNGGGENGGIVETQTRTMTYEAQGGENSAPPGWAEEGLGEYVSSKSVTQGNRTIETITYKTEKDGI 4480
WD40-rpts
Query 4481 VETHVEHRVTIHSDGDIDHDAELSQAILEATQMNPDMVVEKIEVRQETTQ 4530
WD40-rpts
 1 WD40-repeats found in QUERY=ZK270.2a (Len=4530): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 28 1017-1059 2.92 235.08 0.04147 17.5% -11.92Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1017-1059 HKKEGSSVFGFFNRPTKLPAGTEYPEKSNVFTGDLDTTGRTSD WD40 Template TGECLRTLSGHTSGVTSVSFS---PDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |