Input parameters:

  Query = ZK256.1c (Len=978)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK256.1c, Len=978):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGSVAPPGVPGKDKEAPQSTAAIFRVQGNTTTTTTSTTSTNGIAQKHQPTTPLVKAEVSTNHISKDRSKSISKDDIMIE 80  
WD40-rpts                                                                                      

Query       81 TLTSEQAASHEVVPCTHQLRTNLEEGLTTAEATRRRQYHGYNEFDVGEEEPIYKKYLEQFQNPLILLLLASAFVSIVMKQ 160 
WD40-rpts                                                                                      

Query      161 YDDAISITVAVVIVVTVGFVQEYRSEKTLEQLTKLVPPTCHVLRDGKEAMMLARELVPGDIVLLNTGDRIPSDLRIAESF 240 
WD40-rpts                                                                                      

Query      241 SLQIDESSLTGETEPKHKETRSVPAASATGSDVEHLTCIAFMGTLVCAGRGRGIVISTAANSQFGEVVKMMMGEESPKTP 320 
WD40-rpts                                                                                      

Query      321 LQKSMDDLGKQLSIYSFGVIAVIFLIGMFQGRNVVDMFTIGVSLAVAAIPEGLPIVVAVTLAIGVMRMAKRRAVVKKMPA 400 
WD40-rpts                                                                                      

Query      401 VETLGCVTVICSDKTGTLTKNEMTAQAIATPEGKLAEITGIGYSAEGGVVQYQGEQVHQWTHPEFARIIEAGLVCNNATI 480 
WD40-rpts                                                                                      

Query      481 EADKLIGQPTEGAIVVLAKKAQLEGVRSEYKRLREMPFSSDTKWMGVQCADAHGQNVYFIKGALDRVLDQCGTYYSSDNQ 560 
WD40-rpts                                                                                      

Query      561 RKQCDQYSRQHILEIGKELGQKGLRVLGLARGESMQSLMFLGMIGMMDPPRPGAADAISIVKASGVDVKLITGDAMETAQ 640 
WD40-rpts                                                                     (________________

Query      641 SIGQSLGILSSSDSCLSGQQVDQMSDHDLELVIRQVTVFYRASPRHKLKIVKALQALGEVVAMTGDGVNDAVALKKADIG 720 
WD40-rpts      _____________________________WD 1____________________________________________)  

Query      721 VAMGVCGTDVCKEAADMILCDDDFSTMTAAIEEGKAIYHNITNFVRFQLSTSVAALSLIAASTMFKFDNPLNAMQILWIN 800 
WD40-rpts                                                                                      

Query      801 IIMDGPPAQSLGVEPVDDDIIRQRPRNTKQPMLTGKLIADILASAAIIVVGTLSVFYKEMSADNKVTPRDTTMTFTCFVL 880 
WD40-rpts                                                                                      

Query      881 FDMWNALSCRSSRKMIWQIGLRRNRMFSLAVSASLICQLLVIYWAPLQHIFQTEALSLFDLIFLTTITSSVFIFNETRKY 960 
WD40-rpts                                                                                      

Query      961 FSLRSKSLNHDPLSVSGI 978 
WD40-rpts                        

1 WD40-repeats found in QUERY=ZK256.1c (Len=978):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   624-718      3.73  268.55  0.01487       25.0%     21.71

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  624-718    SGVDVKLITGDAMETAQSIGQSLGILSSSDSCLSGQQVDQMSDHDLELVIRQVTVFYRASPRHKLKIVKALQALGEVVAMTGDGVNDAVALKKAD

   WD40 Template    TGECLRTLSGHT-----------------SGVTS------VS----------------FSPD-----------GKRLVSGSEDGTIK-----VWD