Input parameters:

  Query = ZK177.6 (Len=507)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK177.6, Len=507):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNNKGRTPGSAGRTVRSSAQQNGLTMRKRDMTPTRNTNLLPNATFVGDRFLGVRLDQDELDHANHLMTSKLYSNKENLNN 80  
WD40-rpts                                                                                      

Query       81 SMSEPNSPEKKSVEGEALKQMMRHKSTGALTDADDGDRILCYKKNLAPPPAIGYINQAKVLYSTNSVINPASSVKKSTRH 160 
WD40-rpts                                                                                      

Query      161 VKETATKVLDGPGLTKDLYSRHLDWGCHNWVAVALGHELYLWNTETCVIKNLFEDNAPTNEGLITSVRWSQEGRYISLGY 240 
WD40-rpts                                                 (____________________WD 1____________

Query      241 ASGAVKIYDPNRPKTTEYVRELRTLRVGGASRCASIAWRKQGVMTCGYKSGDIVNHDVRISQHVVSSWGGDNGHCRDVTA 320 
WD40-rpts      ________)            (_______________WD 2_______________)        (______________

Query      321 LEWSADENMCVSGSSDRTAKIWDGRHVRGSTVIQDPEPMFTIDEHTGQVRTAQFCSFRDGILATGGGINDGTVKLWDVKR 400 
WD40-rpts      __WD 3________________)            (__________________WD 4__________________)   

Query      401 QFQKVRELNVCETGGVGGIVFNRPYSEMLTASDDGFLRIYRFNANYKLSHEIQASNEPIMDLVGSPFDEVLIGDMEETLK 480 
WD40-rpts        (_________________WD 5________________)     (________________WD 6_____________

Query      481 VFQLFNVDKSTNILDRTAPKNVGLNVR 507 
WD40-rpts      __)                        

6 WD40-repeats found in QUERY=ZK177.6 (Len=507):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   204-249      7.26  414.45  0.00016       27.5%     43.13
  WD 2:  Seg 12   262-297      5.46  340.13  0.00162       20.0%     45.36
  WD 3:  Seg 16   306-343      8.95  484.53  1.8e-05       37.5%     39.92
  WD 4:  Seg 19   356-397      5.88  357.38  0.00095       32.5%     39.33
  WD 5:  Seg 23   403-441      6.69  390.98  0.00033       17.5%     43.27
  WD 6:  Seg 26   447-483      5.85  356.31  0.00098       15.0%     43.86

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  204-249    TETCVIKNLFEDNAPTNEGLITSVRWSQEGRYIS---LGYASGAVKIYD
   WD 2  262-297    ---LR------TLRVGGASRCASIAWRKQG-VMT---CGYKSGDIVNHD
   WD 3  306-343    --SSW------GGDNGHCRDVTALEWSADENMCV---SGSSDRTAKIWD
   WD 4  356-397    -PEPM------FTIDEHTGQVRTAQFCSFRDGILATGGGINDGTVKLWD
   WD 5  403-441    -QKVR------ELNVCETGGVGGIVFNRPYSEML---TASDDGFLRIYR
   WD 6  447-483    --KLS------HEIQASNEPIMDLVGSPFDE-VL---IGDMEETLKVFQ

   WD40 Template    TGECL------RTLSGHTSGVTSVSFSPDGKRLV---SGSEDGTIKVWD