Accession: ZK1251.9 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ZK1251.9 (Len=1701)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK1251.9, Len=1701):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTSKEIYPLRSTGTMMMISDQDLKLSTQLMLRIAELLLEFDANHEQSSFDPIPILKRISELLEQATDIFIKNDPDPLDDR 80  
WD40-rpts                                                                                      

Query       81 HPHRTHPDSALGNILKIIFKNDDFMTKLVVSYILARDNVELNIQGSRLLLACIPGLDSKVVFSEPDDFIPRLYTWAGSEG 160 
WD40-rpts                                                                                      

Query      161 TNETLQGYAMGLLAAALENTENASKYRNENALLVPFGLRRLHELQGRSLEEQKKIGQTDFSQLHAEQSTSNGTSIPSIKI 240 
WD40-rpts                                                                                      

Query      241 TSVDGSTKENEKTFVQSTDPPPPKKRRTEPCLTSLLRTEITQRVPSFHNLRNLDDSNSKWDILQPFLIGDQQVYPLSLAT 320 
WD40-rpts                                                                                      

Query      321 YQRFILQYLAACGEYQDLLLQTFEGNALEILFDYIDLEKSKDVRLTFDALKYLTSLLVHRKFALEFVNKGGIPALLKVPK 400 
WD40-rpts                                                                                      

Query      401 TSLASVGVVTCLYYIAYSNDVMEILCQMSDEIVDETVQYVLWCLEHSHESGMASACMFFSQGLFYKAILRRFDQYDGPRK 480 
WD40-rpts                                                                                      

Query      481 LHNYIATLTLMQNNEDVELTEEQIHTSTQCTRGVCTTFRSYLTAHIFIKVENYKKLYGNNLPTGMRFPELVQGDCPDYKS 560 
WD40-rpts                                                                                      

Query      561 MKPYEEVCWQCEAIVTEMLRFTGSSFREAENLRKLGMVRMFLAVRVLSRDWENISPSLRTEMCVHALETLCMMFCLPSIQ 640 
WD40-rpts                                                                                      

Query      641 TELITQHSYNHSNYDGFTILLQTSLGRYDEDPSLRMAALGCIQRCVYVEPECWKAIIQRVKSSEEKSSSASKRQSKYEII 720 
WD40-rpts                                                                                      

Query      721 MNHLERMWTEVRKTDGIMALVNLINCKIPLTEADSIRKTATNTLTGLARHPEVRQILAKLPLIAHNGLQNLMREPVCSDK 800 
WD40-rpts                                                                                      

Query      801 RDIHAAFCKEAVQLLQVIYGRKIHDQQGKEIQSSEKSHRQWVIENTQVSFNQAELLQLIHDHLLKSKLDSVAAMLKSEAK 880 
WD40-rpts                                                                                      

Query      881 LPDRPASRSINTPILNKPLPSSGNNFSKINDTYPTLAPRTLESEIGGISARRPSNAASLSSPAMATRSHSTDDDVFATPT 960 
WD40-rpts                                                                                      

Query      961 LPRRYTTSGAFPKKLMISPARQKLRPLTPGESSSGYRPIKDLNSIVTDYFRNQHSTCKNPVTTCPPFSLFYQHKCPELSY 1040
WD40-rpts                                                                                      

Query     1041 QTNVVRNISLRTLDQELLRPHERVYSQWTNERTIFSRFRNWKTIHDHDESYTKATFSVDDEHLIVGLFNGEVHWINVDTG 1120
WD40-rpts                                           (_________________WD 1________________)   (

Query     1121 LDEGHTNCHGSALTNIEPSKDGSMMLTSSAFSRPLSALWRLGEALQRVHTYREDSCVKFANTTMQRIVGTCRDKATVYDT 1200
WD40-rpts      __________________WD 2_________________)(_________________WD 3________________) 

Query     1201 ETNHVLDTYLSGIDGLQYEKNYASFSPDDKLIFNDGLLWDVRKKNSAIHVFDRLSKITLFGTFHPHGTQIVINSEVYDIR 1280
WD40-rpts            (_________________WD 4________________)(________________WD 5______________

Query     1281 TFRMLHHVPELNRCQVSFNSTGNIMYATEVTDVHCPDYDEKIFSSFRTFETRDYSALTTFEGRRPVIDLCASHQDQKMCV 1360
WD40-rpts      __)                                       (_________________WD 6________________

Query     1361 IEKVRPQMSDYMIQASTQLKIVEIGRLKDNEDENDEEEDEQREDHDEDEDSDESGDGDDDEEIGGNSSDRESVFRTLGRL 1440
WD40-rpts      _)                                                                              

Query     1441 GDESDSGSSVDDNDTLDDLDFENAQNRIIRRQAQRRRQRLNSSENDAELPGSDEGSDEDGDDDEDGEGDPDFDMGAAIDD 1520
WD40-rpts                                                                                      

Query     1521 LVDAVDEEVDEDELGTDGDDDDSGSWRTTNSIDSEDINLDDLDEEEARVVENEGNNERPARPVDPIEAAAAARRAILGRG 1600
WD40-rpts                                                                                      

Query     1601 LRDLRMGIRGGNRRRNGGGLEQAEMLNARAEEQRVSFMEALVRGAEAERREEEGGDDGESSSSSSSDTDEYQSEEEEINS 1680
WD40-rpts                                                                                      

Query     1681 VSTTALNPALRRRNRRPDDEA 1701
WD40-rpts

6 WD40-repeats found in QUERY=ZK1251.9 (Len=1701):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8  1078-1116     6.96  402.27  0.00024       22.5%     55.15
  WD 2:  Seg 12  1120-1160     5.69  349.76  0.00120       22.5%     51.51
  WD 3:  Seg 16  1161-1199     4.89  316.58  0.00337       20.0%     49.48
  WD 4:  Seg 20  1207-1245     3.20  246.83  0.02898       20.0%     20.49
  WD 5:  Seg 24  1246-1283     4.22  289.18  0.00786       17.5%     36.47
  WD 6:  Seg 30  1323-1362     3.08  241.77  0.03383       17.5%     48.23

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1078-1116   -FRNWKTIHDHD-ESYTKATFSVDDEHLIVGL--FNGEVHWIN
   WD 2 1120-1160   -GLDEGHTNCHG-SALTNIEPSKDGSMMLTSSAFSRPLSALWR
   WD 3 1161-1199   LGEALQRVHTYR-E-DSCVKFANTTMQRIVGT--CRDKATVYD
   WD 4 1207-1245   -DTYLSGIDGLQ-YEKNYASFSPDDKLIFNDG--LLWDVRKKN
   WD 5 1246-1283   --SAIHVFDRLS-KITLFGTFHPHGTQIVINS--EVYDIRTFR
   WD 6 1323-1362   -FSSFRTFETRDYSALTTFEGRRPVIDLCASH--QDQKMCVIE

   WD40 Template    TGECLRTLSGHT-SGVTSVSFSPDGKRLVSGS--EDGTIKVWD