Input parameters:

  Query = ZK1053.2 (Len=536)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZK1053.2, Len=536):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHFKHALITCLLVLSTTTIISAQIPENPVCQPTNQIGNATGAHFLYFLDKAIEPDLLSRLTYLLKAISCEIPSNEKIKNM 80  
WD40-rpts                                                                                      

Query       81 IVSYSGDNQYFGEAVKSSQLPSSLYLPVKESSKPSSNPCDSFRQAIAKTPSEYLNHENVQFIVSVFGDATCFLKAFQSQF 160 
WD40-rpts                                                                                      

Query      161 NGNSRKKSFFYNGILVNSNLTNSNNQSIRMVIPDLVKAINTSRVSLVGSDKINEVHESAHLVQSYASMIRDILLGNSVHD 240 
WD40-rpts                 (____________________WD 1____________________)                       

Query      241 WEEILTTTLAPVTSTMPPTAKRAASIDDEGEMLTFDGSADEEVVIPPSNATNSTSTIAPTTHTILSSTTEVKTTRKQFKK 320 
WD40-rpts                                                                                      

Query      321 IVPIPKPSKIPSRSSTARPTTTTEEYDADTEEDAEKLEMMSGKRKVDNGTTVYVPSDPDAQEGIDANILIYILLLVLLIW 400 
WD40-rpts                                                                                      

Query      401 CFCIALCLIWMYVCAKQRKHKMISKAEEEREAMLALLEKGHETEHSSRRAKPSVSVESDEFDKEWKNIKPSKYTPASVST 480 
WD40-rpts                                                                                      

Query      481 NETKSELESVKQPVAATHVAPVEVSEFEERLDDDVDHKPRHGGYVKTKRTADLHFD 536 
WD40-rpts                                                              

1 WD40-repeats found in QUERY=ZK1053.2 (Len=536):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   172-217      3.53  260.35  0.01914       15.0%     24.86

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  172-217    NGILVNSNLTNSNNQSIRMVIPDLVKAINTSRVSLVGSDKINEVHE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD------GKRLVSGSEDGTIKVWD