Input parameters:

  Query = ZC308.4b (Len=313)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ZC308.4b, Len=313):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTERVLQYPNLLKIVPYLSYSKRMELSKVSPEFRSIHSRLDYSLKTMSFSQDYGAISEEGPIEVGSGILKVESIEYIFE 80  
WD40-rpts                                                                                      

Query       81 YDENMDQVKIKCLLAPELVRFSNDKSIIRRYFHYYLAASQRIVQHVKLRESDSPFRNLQSLKIPSISWTLNGAREYPQFI 160 
WD40-rpts                                                                                      

Query      161 NFQNHVFEKLELINYESIVLTETQEYTVGNENSAIRNFYCILSNMKLELVLGLNYVESFILLCNRLLLDTLHIGSSVTAI 240 
WD40-rpts                                                 (___________________________________W

Query      241 FIKEPLLNVWRTLLERYEDSRGTFMGSGHRKCAILSTDNNIKVAVFENYFGKDSNGKESFTAIKMNNNVEFDA 313 
WD40-rpts      D 1__________________________________)                                   

1 WD40-repeats found in QUERY=ZC308.4b (Len=313):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   204-278      3.36  253.48  0.02364       20.0%     26.30

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  204-278    NMKLELVLGLNYVESFILLCNRLLLDTLHIGSSVTAIFIKEPLLNVWRTLLERYEDSRGTFMGSGHRKCAILSTD

   WD40 Template    TGECLRTLSG------------------HTSGVTSVSFSPD-----------------GKRLVSGSEDGTIKVWD