Input parameters:

  Query = YPR204W (Len=1032)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPR204W, Len=1032):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADTPSVAVQAPPGYGKTELFHLPLIALASKGDVKYVSFLFVPYTVLLANCMIRLGRCGCLNVAPVRNFIEEGCDGVTDL 80  
WD40-rpts                            (_____________________________WD 1________________________

Query       81 YVGIYDDLASTNFTDRIAAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTAPEA 160 
WD40-rpts      _____)                                                                          

Query      161 VADAALQRIGLTGLAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGHVHKIWKKVESQPEEALKLLLALFEI 240 
WD40-rpts                                                  (_______________________________WD 2

Query      241 EPESKAIVVASTTNEVEELACSWRKYFRVVWIHGKLGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDN 320 
WD40-rpts      _______________________________)                                                

Query      321 RLNIIELIQGVGRLRDGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTDLSADT 400 
WD40-rpts                                                                                      

Query      401 VELIERMDRLAEKQATASMSIVALPSSFQESNSSDRCRKYCSSDEDSNTCIHGSANASTNATTNSSTNATTTASTNVRTS 480 
WD40-rpts                                                                                      

Query      481 ATTTASINVRTSATTTESTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTN 560 
WD40-rpts                                                                                      

Query      561 SSTNATTTASINVRTSATTTESTNSNTNATTTESTNSSTNATTTEGTNSNTSATTTASTNSSTNATTTESTNASAKEDAN 640 
WD40-rpts                                                                                      

Query      641 KDGNAEDNRFHPVTDINKESYKRKGSQMVLLERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDVYFCPEGVFTQ 720 
WD40-rpts                                                                                      

Query      721 YGLCKGCQKMFELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYFSVKRGEIYSQIQRNY 800 
WD40-rpts                       (_____________________________________WD 3_____________________

Query      801 AWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKTEVLQYFLNWDEKKCREEWEAKDDTVFVEA 880 
WD40-rpts      ________________)                                                               

Query      881 LEKVGVFQRLRSMTSAGLQGPQYVKLQFSRHHRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFCNKTFR 960 
WD40-rpts                                                                                      

Query      961 QKLEYLLEQISEVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFDILLCRDSSREVGE 1032
WD40-rpts                                                                              

3 WD40-repeats found in QUERY=YPR204W (Len=1032):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-86       3.47  257.84  0.02068       17.5%     23.67
  WD 2:  Seg  8   205-272      3.03  239.95  0.03576       22.5%     27.39
  WD 3:  Seg 20   738-817      2.78  229.55  0.04905       22.5%     27.45

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-86     LPLIAL----------------A-----------SKGDVKYVSFLFVPYTVLLANCMIRLGRC----------------GC--------------LNVAPVRNFIEEGCDGVT------------DLYVGIYD
   WD 2  205-272    IKEKSE----------------V-----------PLGHVHKIWKKVES-------------QPEEALKLLLALFEIEPESK--------------AIVV-----------ASTTNEVEELACSWRKYFRVVWI
   WD 3  738-817    AGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYF--------------S----------------VKRGEIYSQIQRNYAWYLAI-----------TRR------------RETISVLD

   WD40 Template    TGECLR----------------T-----------LSGHTSGVTSVSFS-------------PD----------------GK--------------RLVS-----------GSE------------DGTIKVWD