Input parameters:

  Query = YPR135W (Len=927)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPR135W, Len=927):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVSVIDKLVFDFGGKTLVSLAPDNNTLCVANKNGLTKILKTNNPEEEPETLDSSKLVSSIKCYSNSHFLMTTMQGDALRY 80  
WD40-rpts      (_________________WD 1_________________)   (________________WD 2________________

Query       81 NIDSSQEELLARFALPLRDCCVIHSGKMAVFGGDDLELILLELDDETHKKHAIKIDEQVSQISYNSQMNILAVSMINGKV 160 
WD40-rpts      )  (_________________WD 3________________)   (_________________WD 4_____________

Query      161 QIFSLTSTIPNKVHELNDYIVANSYDDTHRDKILSNMMDDIDKDNDNDLSETADPDENNVADPEFCAANRICTRVAWHPK 240 
WD40-rpts      ___)  (____________________WD 5___________________)       (_________________WD 6

Query      241 GLHFALPCADDTVKIFSIKGYSLQKTLSTNLSSTKAHFIDLQFDPLRGTYIAAVDLNNKLTVWNWETSEIHYTREFKRKI 320 
WD40-rpts      ________________)       (_________________WD 7_________________)  (_____________

Query      321 TNIAWKIQADSKTLDLVLGTWSGSIAIVQNLAESVVSNIPDQSVAESSTKHGLFVDSESDLENLEGNDDINKSDKLFSDI 400 
WD40-rpts      ____WD 8________________)   (_________________WD 9________________)             

Query      401 TQEANAEDVFTQTHDGPSGLSEKRKYNFEDEEDFIDDDDGAGYISGKKPHNEHSYSRVHKTHSFPISLANTGKFRYMPFS 480 
WD40-rpts                                                                                      

Query      481 PAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHD 560 
WD40-rpts                                                                                      

Query      561 SIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSL 640 
WD40-rpts                                                         (_________________WD10_______

Query      641 SELGTSSKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLP 720 
WD40-rpts      _________)                                                                      

Query      721 ILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKAILNKKNEI 800 
WD40-rpts                                                                                      

Query      801 GADTEAEEGEEDKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVE 880 
WD40-rpts                                                                                      

Query      881 KALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQLK 927 
WD40-rpts                                                     

10 WD40-repeats found in QUERY=YPR135W (Len=927):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       8.38  460.66  3.8e-05       25.0%     54.90
  WD 2:  Seg  4    44-81       3.10  242.70  0.03288       12.5%     48.21
  WD 3:  Seg  8    84-122      6.43  380.22  0.00047       15.0%     48.21
  WD 4:  Seg 11   126-164      7.01  404.29  0.00022       10.0%     54.33
  WD 5:  Seg 15   167-211      4.37  294.97  0.00658        5.0%     22.57
  WD 6:  Seg 17   219-257      6.84  397.03  0.00028       17.5%     43.95
  WD 7:  Seg 20   265-304      5.87  357.09  0.00096       17.5%     48.47
  WD 8:  Seg 24   307-345      4.26  290.70  0.00750        7.5%     32.37
  WD 9:  Seg 27   349-387      2.85  232.26  0.04518        7.5%      4.37
  WD10:  Seg 40   612-650      4.73  310.18  0.00410       27.5%     37.94

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MVSVIDKLVFDFGGKTLVSLAP-DNN------TLCVANKNGLTKILK
   WD 2   44-81     -PEEEPETLDSSKLVSSIKCYS-NSH------FLMT-TMQGDALRYN
   WD 3   84-122    -SSQEELLARFALPLRDCCVIH-SGK------MAVFGGDDLELILLE
   WD 4  126-164    -ETHKKHAIKIDEQVSQISYNS-QMN------ILAVSMINGKVQIFS
   WD 5  167-211    -STIPNKVHELNDYIVANSYDD-THRDKILSNMMDDIDKDNDNDLSE
   WD 6  219-257    -NVADPEFCAANRICTRVAWHP-KGL------HFALPCADDTVKIFS
   WD 7  265-304    -KTLSTNLSSTKAHFIDLQFDPLRGT------YIAAVDLNNKLTVWN
   WD 8  307-345    -TSEIHYTREFKRKITNIAWKI-QAD------SKTLDLVLGTWSGSI
   WD 9  349-387    -QNLAESVVSNIPDQSVAESST-KHG------LFVDSESDLENLEGN
   WD10  612-650    TSPIV-ALTAQNYRVFSVHYSQ-FHG------LSYSLSELGTSSKRY

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGK------RLVSGSEDGTIKVWD