Input parameters:

  Query = YPR085C (Len=443)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPR085C, Len=443):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRGFSNEIILKRTLTLSDFTLRYHKRGITALQVIKAPSVSNVPVLLSGDNYGYFVMWDLVTKRPITHIEIEGNSHIIAFW 80  
WD40-rpts                   (____________________WD 1___________________)   (_________________W

Query       81 WVETTNVLYILSKDSMLRIFELDSSTQLSIDLVRKLSQANKTDHLQWTKIYEMPINTLNFANFIIEAEVKPTKDNKSYRL 160 
WD40-rpts      D 2_________________)                                                           

Query      161 VCCHTDDSETIDIYQIIEDSTFKLKRPFNNINFPRFLKQQNFLGISKDSKFGIIMRFAKLNDVIFLGYENGFVVGFKITF 240 
WD40-rpts                       (___________________________WD 3___________________________)  (

Query      241 DEGLQRDIAELVHVSNDHYPNPILDMCVSGDELYSCSTDDFITKYKIPVNLQLETKYLRDDALLIKCPSSLRVSEPSKVH 320 
WD40-rpts      _____________________WD 4____________________)                                  

Query      321 LPLKNIGHIDKVKDDYLVVSSWSGMTIVYNMRTSEVEQTFVKSKNNLVVSDSSMGDLTNGSGSNTESSSKSHNYKVGAMT 400 
WD40-rpts                                       (_________________WD 5________________)(_______

Query      401 CLESFDVQSDGLRLGQLRRIKALAKCNWCLIGYEDGTIKLNKI 443 
WD40-rpts      _______________WD 6______________________) 

6 WD40-repeats found in QUERY=YPR085C (Len=443):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    14-58       6.12  367.31  0.00070       27.5%     42.84
  WD 2:  Seg  5    62-101      5.96  360.98  0.00085       10.0%     52.61
  WD 3:  Seg 12   178-237      4.91  317.55  0.00327       12.5%     38.00
  WD 4:  Seg 15   240-286      4.94  318.80  0.00314       22.5%     23.17
  WD 5:  Seg 21   354-392      4.23  289.53  0.00778       15.0%     12.93
  WD 6:  Seg 22   393-442      4.00  279.97  0.01046       20.0%     24.29

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   14-58     LTLSDF--------------------TLRYH-KRGITA-------LQVIKAPSVSN-----------VPVLLSGDNYGYFVMWD
   WD 2   62-101    -KRPIT--------------------HIEIEGNSHIIA-------F-----WWVET-----------TNVLYILSKDSMLRIFE
   WD 3  178-237    EDSTFKLKRPFNNINFPRFLKQQNFLGISKD-SKFGII-------M-----RFAKL-----------NDVIFLGYENGFVVGFK
   WD 4  240-286    FDEGLQ--------------------RDIAE-LVHVSNDHYPNPIL-----DMCVS-----------GDELYSCSTDDFITKYK
   WD 5  354-392    -SEVEQ--------------------TFVKS-KNNLVV-------S-----DSSMG-----------DLTNGSGSNTESSSKSH
   WD 6  393-442    -NYKVG--------------------AMTCL-ESFDVQ-------S-----DGLRLGQLRRIKALAKCNWCLIGYEDGTIKLNK

   WD40 Template    TGECLR--------------------TLSGH-TSGVTS-------V-----SFSPD-----------GKRLVSGSEDGTIKVWD