Input parameters:

  Query = YPL247C (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPL247C, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPFHNGNKRSSISFGSSQRQPYNKNNYLSGTNGPSSAAQDQGRGPSPFGMSGNTTNGGNSKRNSGCDLSATYYASRSPM 80  
WD40-rpts                                                                                      

Query       81 YSPLDFSPPVFSPNHSQLQQARGYAANIPVVSNLMNPSMASVCEYQSHYPLFGLDWSADDYVCLGSYKEDSRNKLQVLHS 160 
WD40-rpts                                          (__________________WD 1_________________)  (

Query      161 NDLLSWESVVDADVVYPVSKIQWVPSQLYPRKLATCSDSLRIWSVSPEERQFQEQINLSLCKYNRQHPANPAAADDMKVI 240 
WD40-rpts      ____________________WD 2___________________)                            (_______

Query      241 GTFPPITSFDWNTVDTNLIISSSIDTTCIVWDLQSSHYVKTQLIAHDSEVFDVRFLTKSTQLFASCGGDGSVRVFDLRSL 320 
WD40-rpts      __________WD 3_________________)(___________________WD 4___________________)    

Query      321 AHSTIIYEPPSSSVSGATAGTITPSSKGSDALLRLEPSPYDPNVLATFAADSNKIIILDMRNPESPILNLQGHGSSVNGI 400 
WD40-rpts                        (__________________WD 5_________________)    (________________

Query      401 KWHPTKRNVLLSCGDDCQVLYWDLNSSFMEINAAGSKSPSIHGTSLEDPDGDTEMTDGGAGSGLNEDPLSLNNNSKQVCK 480 
WD40-rpts      _WD 6_________________)   (_____________________WD 7____________________)       

Query      481 TLETPNMMYANKTQEINNIAWRPQRGDWFGCVSGKKFQNVRVL 523 
WD40-rpts        (__________________WD 8_________________)

8 WD40-repeats found in QUERY=YPL247C (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   117-157      4.43  297.76  0.00603       17.5%     43.57
  WD 2:  Seg  9   160-204      5.03  322.42  0.00281       12.5%     36.28
  WD 3:  Seg 15   233-272      6.46  381.57  0.00045       27.5%     46.94
  WD 4:  Seg 19   273-316      6.72  392.43  0.00032       27.5%     54.16
  WD 5:  Seg 24   339-379      4.38  295.60  0.00645       20.0%     42.53
  WD 6:  Seg 27   384-423      7.70  432.57  9.2e-05       27.5%     49.52
  WD 7:  Seg 31   427-473      3.13  243.97  0.03163       17.5%      3.65
  WD 8:  Seg 33   483-523      3.46  257.61  0.02082       17.5%     26.66

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  117-157    -PS---MASVCE----YQSHYPLF--GLDWSA---DD-YV-----CLGSYKED-SRNKLQV
   WD 2  160-204    SND---LLSWESVVDADVVY-PVS--KIQWVP---SQ-LY-----PRKLATCS-DSLRIWS
   WD 3  233-272    -AA---DDMKVI----GTFP-PIT--SFDWNT--VDT-NL------IISSSID-TTCIVWD
   WD 4  273-316    LQSSHYVKTQLI----AHDS-EVF--DVRFLT---KSTQL------FASCGGD-GSVRVFD
   WD 5  339-379    -AG---TITPSS----KGSD-ALL--RLEPSP--YDP-NV------LATFAADSNKIIILD
   WD 6  384-423    -ES---PILNLQ----GHGS-SVN--GIKWHP---TK-RN-----VLLSCGDD-CQVLYWD
   WD 7  427-473    -SF---MEINAA----GSKS-PSIHGTSLEDP---DG-DTEMTDGGAGSGLNE-DPLSLNN
   WD 8  483-523    -ET---PNMMYA----NKTQ-EIN--NIAWRPQRGDW-FG------CVSGKKF-QNVRVL-

   WD40 Template    TGE---CLRTLS----GHTS-GVT--SVSFSP---DG-KR------LVSGSED-GTIKVWD