Input parameters:

  Query = YPL183C (Len=1013)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPL183C, Len=1013):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKDLSHYGPALCVKFYNDYVLAGYGPFIHVYDYHSATLINKCRLFHYNKVHGLSLSSEGKILAYGARSVTIVELEDVLKK 80  
WD40-rpts      (_____________WD 1_____________)(___________________WD 2___________________)    

Query       81 ESLVDFERINSDWITGATFSFDNLQIYLLTCYNKVLICDLNCEVLFRKSLGGERSILYSGIIKVFGPDKVYVNAGTVMGG 160 
WD40-rpts      (_________________WD 3________________)          (_______________WD 4___________

Query      161 VIIWDLFSETKIHNLLGHEGSIFYVNLSNNGRYVASCSDDRSIRLWDLETGKQLSVGWSHTARIWNLMFFDNDSKLISVS 240 
WD40-rpts      ____)   (_________________WD 5________________)   (_________________WD 6________

Query      241 EDCTCRVWNIIESRENVAELSISNVYEVHLIKSIWGVDVKDDEMIAVTSGNDGRLKLIDLLQLKRHGDEETSFSLDDIAK 320 
WD40-rpts      ________)          (_________________WD 7_________________)(________________WD 8

Query      321 QCGDIFEKNESIKGFQWFSFGVIAITSLGKILKYSDVTKQWKLLLTNEKFNSYPITNGIQTQNIAVFSNNKSDILLIKFS 400 
WD40-rpts      _______________)   (________________WD 9________________)   (_________________WD

Query      401 KDSADIIETEEFHLDELSKTNNCLVTEYDDDSFLLTLQSPNPREKFVCLEISLQNLKIKSKHCFNKPENFSSSCLTSFRN 480 
WD40-rpts      10________________)                                   (__________________WD11___

Query      481 HILVGSRFSTLVIYNLLDESEEPFIIRRLSPGDTTTSIEFVEDKDNSAVFSVTNRDGYYVFIELTKNSLEEGPYRLSYKV 560 
WD40-rpts      ______________)            (_______________WD12_______________)        (________

Query      561 LHSNKMMKGFLEGAFFNSKGEYITYGFKSSLFYLYNETNCYELASEVCGGSHRLWNLAKITDGHVLMYIKASRFHLRKIY 640 
WD40-rpts      ____________WD13___________________)(__________________WD14__________________)  

Query      641 NSIVPETLENGVHGREIRDISICPVSNTNTNDNFKDGHIFCTASEDTTIKLGYFNNRTGKVQNFWTQRKHVSGLQRCQFI 720 
WD40-rpts              (____________________WD15___________________)       (________________WD1

Query      721 NHKLMISSSAREELFLWELNDKYNKRPYMTIRQALPVSTNNSDLRIMDFDVKFISQSGDFLLVTVYSDSTIKIWHYRENQ 800 
WD40-rpts      6________________)                  (_________________WD17________________)  (__

Query      801 NKFDLIMQGRYKTCCLFNVVFIALKEELLVVISPTDGHLVVYNITEYVPFSVDPISGDLVDHKLDATISNLPAPVAQLPV 880 
WD40-rpts      __________________WD18____________________)                            (________

Query      881 HQSGVKSLDYVANATRTSATILTGGDDNGLGLSNLKLDDSNKVTLKTSDFIAAAASSTITSGMLINGGKEVITTSVDQVI 960 
WD40-rpts      ___________WD19__________________)  (_____________________WD20__________________

Query      961 RAWEITAGKLSLVDKKRTTVADTGSLEIISNDEDADSEKTLLIGGVGLSIWKK 1013
WD40-rpts      ___)                                                 

20 WD40-repeats found in QUERY=YPL183C (Len=1013):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       2.93  235.55  0.04088       20.0%     30.71
  WD 2:  Seg  4    33-76       5.69  349.82  0.00120       27.5%     53.03
  WD 3:  Seg  8    81-119      6.20  370.58  0.00063       12.5%     54.23
  WD 4:  Seg 13   130-165      5.53  342.90  0.00149       27.5%     44.37
  WD 5:  Seg 17   169-207      9.34  500.28  1.1e-05       30.0%     54.24
  WD 6:  Seg 21   211-249      9.22  495.53  1.3e-05       32.5%     55.94
  WD 7:  Seg 25   260-299      6.07  365.50  0.00074       20.0%     52.25
  WD 8:  Seg 29   300-336      2.88  233.57  0.04342       27.5%     29.58
  WD 9:  Seg 32   340-377      6.12  367.66  0.00069        7.5%     49.79
  WD10:  Seg 36   381-419      7.54  426.29  0.00011       15.0%     48.79
  WD11:  Seg 43   455-495      6.39  378.51  0.00049       10.0%     48.30
  WD12:  Seg 48   508-543      4.72  309.48  0.00420       10.0%     35.36
  WD13:  Seg 52   552-596      6.60  387.29  0.00038       10.0%     51.69
  WD14:  Seg 56   597-638      3.81  272.20  0.01329       12.5%     50.21
  WD15:  Seg 61   649-693      5.40  337.65  0.00175       25.0%     33.87
  WD16:  Seg 64   701-738      5.57  344.83  0.00140       22.5%     53.39
  WD17:  Seg 69   757-795      4.56  302.82  0.00516       25.0%     27.11
  WD18:  Seg 72   798-843      6.07  365.60  0.00074       17.5%     53.35
  WD19:  Seg 76   872-914      6.30  375.04  0.00055       20.0%     53.21
  WD20:  Seg 80   917-964      8.16  451.94  5.0e-05       22.5%     48.26

Multiple sequence alignment of 20 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-32     ----------------MKD--------LSH-YGPALC---VKF----YNDYVLAGYGP------FI-HVYD
   WD 2   33-76     YH-----SATLI---NKCR--------LFH-YNKVHG---LSL----SSEGKILAYGA---RSVTIVELED
   WD 3   81-119    -E-----S---L---VDFE--------RIN-SDWITG---ATF----SFDNLQIYLLT---CYNKV-LICD
   WD 4  130-165    ------------------L--------GGE-RSILYSGIIKVF----GPDKVYVNAGT---VMGGV-IIWD
   WD 5  169-207    -E-----T---K---IHNL--------LGH-EGSIFY---VNL----SNNGRYVASCS---DDRSI-RLWD
   WD 6  211-249    -G-----K---Q---LSVG--------WSH-TARIWN---LMF----FDNDSKLISVS---EDCTC-RVWN
   WD 7  260-299    -L-----S---I---SNVY--------EVHLIKSIWG---VDV----KDDEMIAVTSG---NDGRL-KLID
   WD 8  300-336    ---------------LLQL--------KRH---GDEE---TSF----SLDDIAKQCGDIFEKNESI-KGFQ
   WD 9  340-377    FG-------------VIAI--------TSL-GKILKY---SDV----TKQWKLLLTNE---KFNSY-PITN
   WD10  381-419    -T-----Q---N---IAVF--------SNN-KSDILL---IKF----SKDSADIIETE---EFHLD-ELSK
   WD11  455-495    NL-----K---I--KSKHC--------FNK-PENFSS---SCL----TSFRNHILVGS---RFSTL-VIYN
   WD12  508-543    ---------------RLSP--------GDT-TTSIEF---VED----KDNSAVFSVTN---RDGYY-VFIE
   WD13  552-596    GPYRLSYK---V---LHSN--------KMM-KGFLEG---AFF----NSKGEYITYGF---KSSLF-YLYN
   WD14  597-638    ET-----N---CYELASEV--------CGG-SHRLWN---LAK----ITDGHVLMYIK----ASRF-HLRK
   WD15  649-693    ENGVHGRE---I---RDIS--------ICP-VSNTNT---NDN----FKDGHIFCTAS---EDTTI-KLGY
   WD16  701-738    -V-----Q---N---FWTQ--------RKH-VSGLQR---CQF----INH-KLMISSS---AREEL-FLWE
   WD17  757-795    VS-----T---N---NSDL--------RIM-DFDVKF---IS-----QSGDFLLVTVY---SDSTI-KIWH
   WD18  798-843    EN-QNKFD---L---IMQG--------RYK-TCCLFN---VVF--IALKEELLVVISP---TDGHL-VVYN
   WD19  872-914    -P-----A---P---VAQL--------PVH-QSGVKS---LDYVANATRTSATILTGG---DDNGL-GLSN
   WD20  917-964    LD-----D---S---NKVTLKTSDFIAAAA-SSTITS---GML----INGGKEVITTS---VDQVI-RAWE

   WD40 Template    TG-----E---C---LRTL--------SGH-TSGVTS---VSF----SPDGKRLVSGS---EDGTI-KVWD