Input parameters:

  Query = YPL139C (Len=460)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPL139C, Len=460):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTLDIAEDNKIKNEEFKIWKKSIPSLYQHISSLKPIFGSGVDESPSTLRSIVFTNDSSCNKSKGVLSVPLLYSQGSEIF 80  
WD40-rpts                                                                                      

Query       81 EVDCIVPLGLHYKKPESISEPLVQPDYTMESQKVEQTVLIPKWEFKGETIAKMIYVDNSEINVKVIALSTNGSLAWFREG 160 
WD40-rpts                                                                                      

Query      161 VKSPVYTMMEPSTSLSSASSGNQNKPCVDFAISNDSKTLTVTKEKHLDNENATIKLIDNSGKIGEVLRTIPVPGIKNIQE 240 
WD40-rpts                                                                     (________________

Query      241 IKFLNNQIFATCSDDGIIRFWGNEIGKKPLWILNDSLDGKTTCFAASPFVDTLFMTGTSGGALKVWDIRAVIALGDADAE 320 
WD40-rpts      _WD 1________________)(____________________WD 2___________________)             

Query      321 LNINQGHNKVNELFKVHHFYSEQVSKIEFSSISPMEVVTIGGLGNVYHWNFEPVFAIYNEIHEDFQGIISDELEAESMAF 400 
WD40-rpts                (_________________WD 3_________________)                              

Query      401 YHTEGCRREIGENNKVNTVAYHKYIEDLVATVDSDGLLTVYKPFTGKVLDGSREVGAAKS 460 
WD40-rpts            (_______________WD 4_______________)                  

4 WD40-repeats found in QUERY=YPL139C (Len=460):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   224-262      4.04  281.71  0.00991       25.0%     51.85
  WD 2:  Seg 15   263-307      5.35  335.79  0.00186       25.0%     43.49
  WD 3:  Seg 19   331-370      4.06  282.41  0.00970       17.5%     55.00
  WD 4:  Seg 24   407-442      4.28  291.42  0.00734       17.5%     44.91

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  224-262    -GEVLRTI----PVPGIKNIQEIKFL-N-N-QIFATCSDDGIIRFWG
   WD 2  263-307    NEIGKKPLWILNDSLDGKTTCFAASPFV-D-TLFMTGTSGGALKVWD
   WD 3  331-370    -NELFKVH----HFYSEQVSKIEFSS-I-SPMEVVTIGGLGNVYHWN
   WD 4  407-442    -----RRE----IGENNKVNTVAYHK-YIE-DLVATVDSDGLLTVYK

   WD40 Template    TGECLRTL----SGHTSGVTSVSFSP-D-G-KRLVSGSEDGTIKVWD