Input parameters:

  Query = YPL007C (Len=588)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YPL007C, Len=588):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLLKDLLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLL 80  
WD40-rpts                                                                                      

Query       81 NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 
WD40-rpts                                       (___________________WD 1___________________)   

Query      161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVV 240 
WD40-rpts                                                                                      

Query      241 LTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTI 320 
WD40-rpts                                                                                      

Query      321 WNEFNNYETTLVIHGISLSPDGYSIAIVYDMERVAFKYKIASEQSFNIMFAPLYHTWTISERAVGLAWYQTYQIYNQSLP 400 
WD40-rpts                                                                                      

Query      401 KLPENFSMNKKLLNGNYPISLDFQSYLNALMKSEEMRIIMFLNMTIDKPSILSFLEALYEYAINKKSELTNSFDLACVLS 480 
WD40-rpts                                                                                      

Query      481 IAAILKREAPIYNGTLLMKNSFLEETFNLESFTADPETVTSTTNNTWKRCGVTLLPILTTHVKICPVSKQRVIDIKRDDL 560 
WD40-rpts                                                                                      

Query      561 NDYGWFTRGLLERFNEISVYCGTTLEVM 588 
WD40-rpts                                  

1 WD40-repeats found in QUERY=YPL007C (Len=588):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   114-157      4.95  319.06  0.00312       20.0%     54.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  114-157    DNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS

   WD40 Template    TGECLRTLSG----HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD