Input parameters:

  Query = YOR272W (Len=460)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR272W, Len=460):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTEDKSQVKIRFFTREKDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPVPFDFLIEGELLRTSLHDYLTKKGLSSE 80  
WD40-rpts                    (__________________________________WD 1___________________________

Query       81 ASLNVEYTRAILPPSYLNSFSNEDWVSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQKQYSGHSGPIRAVKYISNTRLVS 160 
WD40-rpts      ______)  (__________________WD 2__________________)  (________________WD 3______

Query      161 AGNDRTLRLWKTKNDDLKLTSQQQAQEDDDDEVNIEDGKTLAILEGHKAPVVSIDVSDNSRILSASYDNSIGFWSTIYKE 240 
WD40-rpts      __________)                          (________________WD 4________________)     

Query      241 MTVVDPLEDINNPNNKISTAARKRRKLTMKDGTIRRRAPLSLLESHTAPVEQVIFDSTDNTVGYSVSQDHTIKTWDLVTA 320 
WD40-rpts                                             (________________WD 5_______________)   (

Query      321 RCIDTRTTSYSLLSIAQLSTLNLLACGSSARHITLHDPRVGASSKVTQQQLIGHKNFVSSLDTCPENEYILCSGSHDGTV 400 
WD40-rpts      ________________WD 6________________)       (_________________WD 7______________

Query      401 KVWDVRSTSPMYTITREDKSVQKGVNDKVFAVKWAEKVGIISAGQDKKIQINKGDNIFKN 460 
WD40-rpts      ___)           (________________WD 8________________)       

8 WD40-repeats found in QUERY=YOR272W (Len=460):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    15-87       4.02  280.81  0.01019       20.0%     31.50
  WD 2:  Seg  6    90-131      8.94  483.85  1.9e-05       25.0%     52.52
  WD 3:  Seg 10   134-171      8.30  457.31  4.3e-05       30.0%     54.82
  WD 4:  Seg 15   198-235      8.44  463.14  3.6e-05       35.0%     53.93
  WD 5:  Seg 22   280-316      7.64  430.38  9.8e-05       42.5%     46.72
  WD 6:  Seg 25   320-357      6.38  378.25  0.00050       20.0%     53.47
  WD 7:  Seg 29   365-404      8.45  463.66  3.5e-05       42.5%     45.83
  WD 8:  Seg 32   416-453      5.78  353.50  0.00107       17.5%     41.73

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   15-87     RE--KDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPV-PFDF-LIEGEL-LRTSLHDYLTKKGLSSEASLNVEY
   WD 2   90-131    AILPP---------------SYLNSF---------SNEDWVSSLDV-GDGSKH-IISG----------SYDGIVRTWD
   WD 3  134-171    -G--N---------------VQKQYS---------GHSGPIRAVKY-ISNT-R-LVSA----------GNDRTLRLWK
   WD 4  198-235    -G--K---------------TLAILE---------GHKAPVVSIDV-SDNS-R-ILSA----------SYDNSIGFWS
   WD 5  280-316    ---------------------LSLLE---------SHTAPVEQVIFDSTDNTV-GYSV----------SQDHTIKTWD
   WD 6  320-357    -A--R---------------CIDTR----------TTSYSLLSIAQ-LSTLNL-LACG----------SSARHITLHD
   WD 7  365-404    -K--V---------------TQQQLI---------GHKNFVSSLDT-CPENEYILCSG----------SHDGTVKVWD
   WD 8  416-453    -R--E---------------DKSVQK---------GVNDKVFAVKW-AEKVG--IISA----------GQDKKIQINK

   WD40 Template    TG--E---------------CLRTLS---------GHTSGVTSVSF-SPDGKR-LVSG----------SEDGTIKVWD