Input parameters:

  Query = YOR269W (Len=494)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR269W, Len=494):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNWQQQLPLTDTQKNELDKSVLRYLNWNYKQTVRHEHAQDYESVRHAIVTLSGFLLQESVDRQEFISNNDTSNESMVDI 80  
WD40-rpts                                                                                      

Query       81 DELLLPKKWNSIVRLQKKIIELEQNTETLVSQIKDLNTQVSELAQFKPTTSNGTSAHNVLKWIPRNLPSCLINVESSVTS 160 
WD40-rpts               (________________________WD 1________________________) (_______________

Query      161 VKLHPNLPIVFVATDHGKLYAFDLFNYTIPLASLQSHTKAITSMDVLFTNYTNSSKKNYLVIVTASKDLQIHVFKWVSEE 240 
WD40-rpts      __WD 2________________)(_______________________WD 3_______________________)     

Query      241 CKFQQIRSLLGHEHIVSAVKIWQKNNDVHIASCSRDQTVKIWDFHNGWSLKTFQPHSQWVRSIDVLGDYIISGSHDTTLR 320 
WD40-rpts        (__________________WD 4_________________)   (________________WD 5_____________

Query      321 LTHWPSGNGLSVGTGHEFPIEKVKFIHFIEDSPEIRFRTPSTDRYKNWGMQYCVSASRDRTIKIWEIPLPTLMAHRAPIP 400 
WD40-rpts      __)   (___________________________WD 6___________________________)              

Query      401 NPTDSNFRCVLTLKGHLSWVRDISIRGQYLFSCADDKSVRCWDLNTGQCLHVWEKLHTGFVNCLDLDVDFDSNVTPRQMM 480 
WD40-rpts            (________________WD 7_______________)   (_____________________WD 8________

Query      481 VTGGLDCKSNVFMR 494 
WD40-rpts      ____________) 

8 WD40-repeats found in QUERY=YOR269W (Len=494):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    90-143      4.09  283.57  0.00936       12.5%     26.17
  WD 2:  Seg  4   145-183      8.30  457.44  4.3e-05       22.5%     46.51
  WD 3:  Seg  8   184-235      6.94  401.19  0.00024       30.0%     49.27
  WD 4:  Seg 12   243-283      8.18  452.64  4.9e-05       32.5%     51.37
  WD 5:  Seg 16   287-323      7.53  425.66  0.00011       30.0%     50.98
  WD 6:  Seg 20   327-386      7.07  406.51  0.00021       35.0%     54.01
  WD 7:  Seg 24   407-443      6.88  398.99  0.00026       35.0%     54.40
  WD 8:  Seg 28   447-493      6.37  377.75  0.00050       27.5%     51.86

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   90-143    -NS---IVRLQKKIIELEQNTETLVSQIKD-LNTQVSEL---------AQ--FK---------------------P-------T--TSNGTSAHNVLKWI
   WD 2  145-183    -RN---LPS-----------C------LIN-VESSVTSV---------KL--HP---------------------N-------LPIVFVATDHGKLYAFD
   WD 3  184-235    LFNYTIPLA-----------S------LQS-HTKAITSMDVLFTNYTNSS--KK---------------------N-------YLVIVTASKDLQIHVFK
   WD 4  243-283    -FQ---QIR-----------S------LLG-HEHIVSAV---------KIWQKN---------------------N-------DVHIASCSRDQTVKIWD
   WD 5  287-323    -GW---SLK-----------T------FQP-HSQWVRSI---------DV--L------------------------------GDYIISGSHDTTLRLTH
   WD 6  327-386    -GN---GLS-----------V------GTG-HEFPIEKV---------KF--IHFIEDSPEIRFRTPSTDRYKNWG-------MQYCVSASRDRTIKIWE
   WD 7  407-443    -FR---CVL-----------T------LKG-HLSWVRDI---------SI-------------------------R-------GQYLFSCADDKSVRCWD
   WD 8  447-493    -GQ---CLH-----------V------WEKLHTGFVNCL---------DL--DV---------------------DFDSNVTPRQMMVTGGLDCKSNVFM

   WD40 Template    TGE---CLR-----------T------LSG-HTSGVTSV---------SF--SP---------------------D-------GKRLVSGSEDGTIKVWD