Input parameters:

  Query = YOR187W (Len=437)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOR187W, Len=437):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSALLPRLLTRTAFKASGKLLRLSSVISRTFSQTTTSYAAAFDRSKPHVNIGTIGHVDHGKTTLTAAITKTLAAKGGANF 80  
WD40-rpts                                                                                      

Query       81 LDYAAIDKAPEERARGITISTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMPQTREHLLLAR 160 
WD40-rpts                          (_____________________________WD 1__________________________

Query      161 QVGVQHIVVFVNKVDTIDDPEMLELVEMEMRELLNEYGFDGDNAPIIMGSALCALEGRQPEIGEQAIMKLLDAVDEYIPT 240 
WD40-rpts      ___)                                                                            

Query      241 PERDLNKPFLMPVEDIFSISGRGTVVTGRVERGNLKKGEELEIVGHNSTPLKTTVTGIEMFRKELDSAMAGDNAGVLLRG 320 
WD40-rpts                                                                                      

Query      321 IRRDQLKRGMVLAKPGTVKAHTKILASLYILSKEEGGRHSGFGENYRPQMFIRTADVTVVMRFPKEVEDHSMQVMPGDNV 400 
WD40-rpts                                                                                      

Query      401 EMECDLIHPTPLEVGQRFNIREGGRTVGTGLITRIIE 437 
WD40-rpts                                           

1 WD40-repeats found in QUERY=YOR187W (Len=437):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   101-164      3.75  269.69  0.01436       27.5%      3.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  101-164    TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMPQTREHLLLARQVGV

   WD40 Template    TGECLR-TLSGHTSGVTSVSF------------SPDGKRLVSGSEDGTIK-----------VWD