Input parameters:

  Query = YOL138C (Len=1341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YOL138C, Len=1341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLSPHVENASIPKGSTPIPKNRNVSSIGKGEFLGSSSSNNSSFRMNHYSNSGQPSVLDSIRRPNLTPTFSYSNGVYMPE 80  
WD40-rpts                                                                                      

Query       81 SHRTSSFNDSYLPYDKNPYAKTTGSMSNKSNMKIKTKKNAINTNTRKSSGLIYTTKVDKELSSIDKVNDPNINGLVCAGK 160 
WD40-rpts                                                                                      

Query      161 THLGLYKFSPSDRSIKCVHDFITPNSNTSTRGTTSLLPKLSKRTRQNKFSTIADVKTGFNNYKNCIAVCNNSTAISIYDL 240 
WD40-rpts                                            (__________________WD 1_________________) 

Query      241 NKSSSIDNPLITSLCEHTRSINSFDFNMVESNLIISGGQDSCVKIWDLRSNKSKSSNRSDISINTASDSIRDVKWMPGYN 320 
WD40-rpts             (_________________WD 2_________________)         (_______________________

Query      321 FASKNDQGSSTYGNLKSGYKFASIHDSGYLLKFDLRQPAQYEKKLNAHTGPGLCLNWHPNQEYIATGGRDGKSCLWFVGD 400 
WD40-rpts      ___WD 3__________________________)    (_________________WD 4________________)   

Query      401 NANAAENTVLNYGNSPSLHAPNTSLNNSGSLAFPKLTINTGYPVTKLKFKPAYSSNIYNSLLGISSMGDEAEVRIYSLAR 480 
WD40-rpts      (_________________WD 5________________)                                         

Query      481 KYIPKHVLLSETPSLGLVWWDENLIFNIDKGTRINGWDINKEPTVLENLSKNTTTWRDLDGNGLLSVGQEIGSYEVVEPE 560 
WD40-rpts      (________________WD 6________________)                                          

Query      561 LQPTSSTTCKKHPGTIKNPKNGNPENQGIIGGIKKGFSHTGLTSFTPERPPTLKAGPTFSTKSLTLASGASSFNSSSASL 640 
WD40-rpts                                                                                      

Query      641 TSLTPQTENREEIAIEPPCIITLDIPQIFNNIRLTKIAHSRKKNVISESSSMKNSPVEKFKYLARQLKFSYIREHNVSDS 720 
WD40-rpts                                                                                      

Query      721 ADTAYKNDIENIDVVKNATETHGDNTTTTNNNDDGDDDDDDDDDDKIIESHLLKKYNFPENNTWATLMNEKVNNKKSKRN 800 
WD40-rpts                                                                                      

Query      801 SSSSREFDEKDVRSSISSISASRQSHDRARKIDKNVEAELQEKIQTLVDLISIATHNASVYLSIDDLTNFKIWILIRDSL 880 
WD40-rpts                                                                                      

Query      881 LWDLKWMTSSQISSDNASNMDANESSDFEAGENLKTGKEFPEEDGAGTSGAESLVEERPQAFRANSDEPSDAEKKPVSKL 960 
WD40-rpts                                                                                      

Query      961 KEQLKNTEIIPYAQPNEDSDEVLTKLKELQNQRLESRTKMGETVSDDVIIEEDEHEHQEEEQPHDSPTKSAQFHASPIAK 1040
WD40-rpts                                                                                      

Query     1041 SIPILQKREHRKSFIDTFMLHSPNGYNGDTDIGNEDDNISPRFTYNSVSPRSKVSSLQSYATTTSQLETFKKLSSHTAPI 1120
WD40-rpts                                                                                      

Query     1121 IGSPRHAPSRPDSIGREQLSSSLTKKLAKCKKIIADPPWDTKKLIKQLYNQATETGNVVLTVNILFLFQTIYQITEIDIA 1200
WD40-rpts                                                                                      

Query     1201 KDAIAHFLLLLHRYELFGIAADVLKYCPFEDIMGSEGDQSSIRLFCERCGELITNESSKEKLRAEAQQTGNKKIMDKFGY 1280
WD40-rpts                                                                                      

Query     1281 WYCDSCKKKNTSCVLCERPLKKLTMVILPCGHEGHFQCIQEWFLDENEQECPGGCPGVAFI 1341
WD40-rpts                                                                   

6 WD40-repeats found in QUERY=YOL138C (Len=1341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   199-239      4.95  319.17  0.00311       17.5%     40.26
  WD 2:  Seg  9   248-287      7.52  425.22  0.00012       27.5%     51.87
  WD 3:  Seg 13   297-354      4.08  283.29  0.00943       15.0%     44.35
  WD 4:  Seg 16   359-397      8.35  459.56  4.0e-05       20.0%     43.83
  WD 5:  Seg 19   401-439      4.91  317.67  0.00325       12.5%     -5.44
  WD 6:  Seg 23   481-518      3.78  270.90  0.01383       10.0%     47.99

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-239    KLSKRTRQNKFSTIADVKTGFNN-------------------YKNCIAVCNNSTAISIYD
   WD 2  248-287    NPLITSLCEHTRSINSF--DFNM------------------VESNLIISGGQDSCVKIWD
   WD 3  297-354    NRSDISINTASDSIRDV--KWMPGYNFASKNDQGSSTYGNLKSGYKFASIHDSGYLLKFD
   WD 4  359-397    AQYEKKLNAHTGPGLCL--NWHP-------------------NQEYIATGGRDGKSCLWF
   WD 5  401-439    NANAAENTVLNYGNSPS--LHAP-------------------NTSLNNSGSLAFPKLTIN
   WD 6  481-518    KYIPKHVLLSETPSLGL--VWW--------------------DENLIFNIDKGTRINGWD

   WD40 Template    GECLRTLSGHTSGVTSV--SFSP-------------------DGKRLVSGSEDGTIKVWD