Input parameters:

  Query = YNR026C (Len=471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YNR026C, Len=471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKFVTASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK 80  
WD40-rpts      (_________________WD 1________________)                           (_____________

Query       81 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 160 
WD40-rpts      _____WD 2_________________)  (_______________________WD 3______________________)

Query      161 PSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK 240 
WD40-rpts      (__________________WD 4_________________)   (__________________WD 5_____________

Query      241 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD 320 
WD40-rpts      _____)         (_________________WD 6________________)(___________________WD 7__

Query      321 STYVASVSAANTIHIIKLPLNYANYTSMKQKISKFFTNFILIVLLSYILQFSYKHNLHSMLFNYAKDNFLTKRDTISSPY 400 
WD40-rpts      ________________)                                                 (_____________

Query      401 VVDEDLHQTTLFGNHGTKTSVPSVDSIKVHGVHETSSVNGTEVLCTESNIINTGGAEFEITNATFREIDDA 471 
WD40-rpts      ____WD 8________________)                                              

8 WD40-repeats found in QUERY=YNR026C (Len=471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       4.21  288.62  0.00800       10.0%     29.96
  WD 2:  Seg  6    67-107      5.03  322.38  0.00281       10.0%     38.22
  WD 3:  Seg 10   110-160      5.88  357.67  0.00094       12.5%     40.85
  WD 4:  Seg 14   161-201      6.36  377.28  0.00051       20.0%     51.68
  WD 5:  Seg 18   205-246      4.94  318.60  0.00316       15.0%     57.57
  WD 6:  Seg 22   256-294      8.05  447.34  5.8e-05       20.0%     56.01
  WD 7:  Seg 26   295-337      8.28  456.60  4.4e-05       25.0%     51.87
  WD 8:  Seg 32   387-425      5.81  354.81  0.00103        7.5%     22.56

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     M--K---F---------VTASYNVGY-P-AYGAKFLNNDTLLVAGG--GG--EGNNGIP
   WD 2   67-107    EDND---D---------SPTAIDASK-G-IILVGCNENSTKITQGK--GN--KHLRKFK
   WD 3  110-160    KV-N---DQLEFLTSVDFDASTNADD-Y-TKLVYISREGTVAAIAS--SKVPAIMRIID
   WD 4  161-201    PS-D---L---------TEKFEIETR-GEVKDLHFSTDGKVVAYIT--GS--SLEVIST
   WD 5  205-246    -S-C---I---------ARKTDFDKNWS-LSKINFIADDTVLIAASLKKG--KGIVLTK
   WD 6  256-294    -V-L---R---------SKQVTNRFK-G-ITSMDVDMKGELAVLAS--ND--NSIALVK
   WD 7  295-337    LK-DLSMS---------KIFKQAHSF-A-ITEVTISPDSTYVASVS--AA--NTIHIIK
   WD 8  387-425    -D-N---F---------LTKRDTISS-P-YVVDEDLHQTTLFGNHG--TK--TSVPSVD

   WD40 Template    TG-E---C---------LRTLSGHTS-G-VTSVSFSPDGKRLVSGS--ED--GTIKVWD