Input parameters:

  Query = YNL253W (Len=422)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YNL253W, Len=422):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTIGAVDILNQKTITSEVAASVTSKYLQSTFSKGNTSHIEDKRFIHVSSRSHSRFTSTPITPNEILSLKFHVSGSSMAY 80  
WD40-rpts               (_________________WD 1_________________)   (_________________WD 2______

Query       81 SRMDGSLTVWFIKDASFDKSVEVYIPDCCGSDKLATDLSWNPTSLNQIAVVSNSSEISLLLINEKSLTASKLRTLSLGSK 160 
WD40-rpts      __________)            (________________WD 3________________)(__________________

Query      161 TKVNTCLYDPLGNWLLAATKSEKIYLFDVKKDHSSVCSLNISDISQEDNDVVYSLAWSNGGSHIFIGFKSGYLAILKAKH 240 
WD40-rpts      ___WD 4____________________)          (_________________WD 5________________)   

Query      241 GILEVCTKIKAHTGPITEIKMDPWGRNFITGSIDGNCYVWNMKSLCCELIINDLNSAVTTLDVCHLGKILGICTEDEMVY 320 
WD40-rpts        (_________________WD 6________________)   (_________________WD 7______________

Query      321 FYDLNSGNLLHSKSLANYKTDPVLKFYPDKSWYIMSGKNDTLSNHFVKNEKNLITYWKDMFDNTMIEKRRKNNGGGNNHN 400 
WD40-rpts      __)   (_________________WD 8_________________)                                  

Query      401 KRTSKNTDRIGKDRPSRFNSKK 422 
WD40-rpts                            

8 WD40-repeats found in QUERY=YNL253W (Len=422):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-49       3.74  269.27  0.01454       17.5%     34.66
  WD 2:  Seg  5    53-91       8.76  476.69  2.3e-05       17.5%     55.19
  WD 3:  Seg 10   104-141      6.56  385.73  0.00039       15.0%     43.02
  WD 4:  Seg 13   142-188      7.89  440.73  7.1e-05       22.5%     46.98
  WD 5:  Seg 18   199-237      8.31  457.75  4.2e-05       15.0%     43.86
  WD 6:  Seg 21   243-281      9.64  512.78  7.6e-06       30.0%     52.94
  WD 7:  Seg 25   285-323      8.93  483.55  1.9e-05       25.0%     58.01
  WD 8:  Seg 29   327-366      7.21  412.49  0.00017       17.5%     56.77

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-49     LNQKTIT-------SE-VAASVTSKYLQSTFS-KGNTSHIEDKRFIHVS
   WD 2   53-91     -HSRFTS-------TP-ITPNEILSLKFHVSG-SSMAYSRMDGSLTVWF
   WD 3  104-141    ---YIPD-------CC-GSDKLATDLSWNPTSLNQIAVVSNSSEISLLL
   WD 4  142-188    INEKSLTASKLRTLSL-GSKTKVNTCLYDPLG-NWLLAATKSEKIYLFD
   WD 5  199-237    -LNISDI-------SQ-EDNDVVYSLAWSNGG-SHIFIGFKSGYLAILK
   WD 6  243-281    -LEVCTK-------IK-AHTGPITEIKMDPWG-RNFITGSIDGNCYVWN
   WD 7  285-323    -LCCELI-------IN-DLNSAVTTLDVCHLG-KILGICTEDEMVYFYD
   WD 8  327-366    -GNLLHS-------KSLANYKTDPVLKFYPDK-SWYIMSGKNDTLSNHF

   WD40 Template    TGECLRT-------LS-GHTSGVTSVSFSPDG-KRLVSGSEDGTIKVWD