Input parameters:

  Query = YNL187W (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YNL187W, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKKVICQDIFWSCDGTSFVSVHNDFGIRQYLVPEESNTDKLNRNLLLPFTRFFRNQSIVSCAIDPFYTLYNENSDRLAG 80  
WD40-rpts      (_____________WD 1_____________)                      (__________________WD 2___

Query       81 DRIVVGGKNFPLQLYSLMDGQCILSYDTMNKINGEYETVYSVKIDVESRVYTGSCRNKVAIYDKSRRDAVWMNQSTKKAS 160 
WD40-rpts      _______________)           (_______________WD 3_______________)              (__

Query      161 KGRQSIISCFEEQPMGGQALSRGSLLCGSYANEMFQVDCRHQRLERLNYTRTVAGGIVQILTSDNGRYVYVVRRNSDAIS 240 
WD40-rpts      ________________WD 4_________________)(____________________WD 5_________________

Query      241 IYDRRNLQHELNVLRLPFRIHHNSAKLKAYIDTAYGLSMGTPQGTILNWGRDLVEFGGVPSHNSVEDPLITSIPPESEWR 320 
WD40-rpts      __)            (_______________WD 6______________)                              

Query      321 TNLDSTIPATVVKNCPGDPELFALSHGGTISLCRFGG 357 
WD40-rpts                                           

6 WD40-repeats found in QUERY=YNL187W (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-32       4.73  309.88  0.00414       17.5%     40.82
  WD 2:  Seg  5    55-96       4.60  304.71  0.00486       12.5%     26.53
  WD 3:  Seg  9   108-143      4.85  315.19  0.00352       22.5%     34.20
  WD 4:  Seg 13   158-198      4.86  315.50  0.00348       20.0%     31.13
  WD 5:  Seg 16   199-243      6.19  370.43  0.00063       17.5%     48.88
  WD 6:  Seg 20   256-290      6.17  369.36  0.00065       17.5%     32.86

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-32     --------------MEKKVICQDIFWSCDGTS------FVSVH-NDFGIRQYL
   WD 2   55-96     RN----QSIVSCAIDPFYTLYNENSDRLAGDR------IVVGG-KNFPLQLYS
   WD 3  108-143    T-------MNK--INGEYETVYSVKIDVES-R------VYTGS-CRNKVAIYD
   WD 4  158-198    ---------KA--SKGRQSIISCFEEQPMGGQALSRGSLLCGS-YANEMFQVD
   WD 5  199-243    CRHQRLERLNY--TRTVAGGIVQILTSDNGRY------VYVVRRNSDAISIYD
   WD 6  256-290    ---------LP--FRIHHNSAKLKAYIDTAYG------LSMGT-PQGTILNWG

   WD40 Template    TG----ECLRT--LSGHTSGVTSVSFSPDGKR------LVSGS-EDGTIKVWD