Input parameters:

  Query = YNL182C (Len=555)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YNL182C, Len=555):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDEQVIFTTNTSGTIASVHSFEQINLRQCSTQSRNSCVQVGNKYLFIAQAQKALINVYNLSGSFKRESVEQRLPLPEILK 80  
WD40-rpts                          (_________________WD 1________________)                     

Query       81 CLEVVENDGVQYDRIQGVNHNLPDFNLPYLLLGSTESGKLYIWELNSGILLNVKPMAHYQSITKIKSILNGKYIITSGND 160 
WD40-rpts           (_________________WD 2________________)(___________________WD 3____________

Query      161 SRVIIWQTVDLVSASNDDPKPLCILHDHTLPVTDFQVSSSQGKFLSCTDTKLFTVSQDATIRCYDLSLIGSKKKQKANEN 240 
WD40-rpts      ______)           (_____________________WD 4____________________)   (___________

Query      241 DVSIGKTPVLLATFTTPYSIKSIVLDPADRACYIGTAEGCFSLNLFYKLKGNAIVNLLQSAGVNTVQKGRVFSLVQRNSL 320 
WD40-rpts      _______________WD 5_________________________)  (___________________WD 6_________

Query      321 TGGENEDLDALYAMGQLVCENVLNSNVSCLEISMDGTLLLIGDTEGKVSIAEIYSKQIIRTIQTLTTSQDSVGEVTNLLT 400 
WD40-rpts      _________)   (_________________WD 7________________)   (_________________WD 8___

Query      401 NPYRLERGNLLFEGESKGKQPSNNNGHNFMKIPNLQRVIFDGKNKGHLHDIWYQIGEPEAETDPNLALPLNDFNAYLEQV 480 
WD40-rpts      _____________)                                                                  

Query      481 KTQESIFSHIGKVSSNVKVIDNKIDATSSLDSNAAKDEEITELKTNIEALTHAYKELRDMHEKLYEEHQQMLDKQ 555 
WD40-rpts                                                                                 

8 WD40-repeats found in QUERY=YNL182C (Len=555):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    21-59       7.41  420.64  0.00013       12.5%     47.84
  WD 2:  Seg  9    86-124      6.96  402.24  0.00024       10.0%     43.66
  WD 3:  Seg 13   125-167      8.01  445.48  6.2e-05       15.0%     50.53
  WD 4:  Seg 17   179-225      6.99  403.37  0.00023       32.5%     52.36
  WD 5:  Seg 21   229-285      4.61  304.92  0.00483       12.5%     43.00
  WD 6:  Seg 25   288-330      4.08  283.33  0.00942        5.0%     28.09
  WD 7:  Seg 27   334-372      8.63  471.12  2.8e-05       22.5%     57.22
  WD 8:  Seg 31   376-414      3.50  259.39  0.01972       17.5%     11.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-59     -FE---QINLRQCSTQSRN------------------SCVQV--------GNKYLFIAQAQKALINVYN
   WD 2   86-124    END---GV-QYDRIQGVNH------------------NLPDF--------NLPYLLLGSTESGKLYIWE
   WD 3  125-167    LNSGILLNVKPMAHYQSIT------------------KIKSI--------LNGKYIITSGNDSRVIIWQ
   WD 4  179-225    -PK---PLCILHDHTLPVT------------------DFQVSSSQGKFLSCTDTKLFTVSQDATIRCYD
   WD 5  229-285    -IG---SKKKQKANENDVSIGKTPVLLATFTTPYSIKSIVLD--------PADRACYIGTAEGCFSLNL
   WD 6  288-330    KLKGNAIVNLLQSAGVNTV------------------QKGRV--------FSLVQRNSLTGGENEDLDA
   WD 7  334-372    -MG---QLVCENVLNSNVS------------------CLEIS--------MDGTLLLIGDTEGKVSIAE
   WD 8  376-414    -KQ---IIRTIQTLTTSQD------------------SVGEV--------TNLLTNPYRLERGNLLFEG

   WD40 Template    TGE---CLRTLSGHTSGVT------------------SVSFS--------PDGKRLVSGSEDGTIKVWD