Input parameters:

  Query = YNL035C (Len=389)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YNL035C, Len=389):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASYSLVESNSFGSENWCLKLQPSYKHGLLTGLSNGEIRLLDWSTGKSVQKIKASETAINDMKVIGSDFSAGHLVSSASI 80  
WD40-rpts       (__________________WD 1_________________)   (__________________WD 2____________

Query       81 DAVKVFDIRTNDRIAQIQNEANSPFISLDSRHGLLACGTELQGIDAAVYIYDIRKWDTPLRSLIDSHHDDVTCIKFHPSD 160 
WD40-rpts      ______)   (__________________WD 3__________________)     (_________________WD 4_

Query      161 VNILLSGSTDGYTNIYDLKQDEEEDALHQVINYASIHSCGWLSPKRIFTLSHMETFAIHELNDKSDELKEPQPLDFGDVR 240 
WD40-rpts      ________________)   (_________________WD 5_________________)(___________________

Query      241 EIWNCDYVVDIYPGLIATGKTQENCGELCLLPFKDEKVDTENGIVIPHAHGDEVVRDIFIPAQHSNMLYSCGEDGCVKIW 320 
WD40-rpts      ______WD 6________________________)     (__________________WD 7_________________

Query      321 ENKQGPLDIPENFWDYSKKMNVLGDDDREGSINLDEPLIIQKESVSTRPRKEKHKKAKKHSMKSRFKPY 389 
WD40-rpts      )   (_________________WD 8________________)                          

8 WD40-repeats found in QUERY=YNL035C (Len=389):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-42       6.20  370.60  0.00063       22.5%     46.32
  WD 2:  Seg  5    46-87       7.47  423.15  0.00012       17.5%     56.14
  WD 3:  Seg  9    91-132      5.76  352.45  0.00111       15.0%     49.39
  WD 4:  Seg 13   138-177      7.95  443.09  6.6e-05       32.5%     48.95
  WD 5:  Seg 17   181-220      4.37  294.97  0.00657       17.5%     40.91
  WD 6:  Seg 21   221-275      2.98  237.90  0.03806       12.5%     25.49
  WD 7:  Seg 24   281-321      7.51  425.07  0.00012       27.5%     53.07
  WD 8:  Seg 26   325-363      5.74  351.85  0.00113        7.5%     24.84

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-42     AS-------YSLVESNSFGS--ENWCLKL---QP--S--YKHGLLTGLS----NGE------IRLLD
   WD 2   46-87     -G-------KSVQKIKASET--AINDMKVIGSDF--S--AGH-LVSSAS----IDA------VKVFD
   WD 3   91-132    -N-------DRIAQIQNEAN--SP-FISL---DS--R--HGL-LACGTELQGIDAA------VYIYD
   WD 4  138-177    -T-------PLRSLIDSHHD--DVTCIKF---HP-SD--VNI-LLSGST----DGY------TNIYD
   WD 5  181-220    -D-------EEEDALHQVINYASIHSCGW---LS--P---KR-IFTLSH----MET------FAIHE
   WD 6  221-275    LNDKSDELKEPQPLDFGDVR--EIWNCDY---VV--DIYPGL-IATGKT----QENCGELCLLPFKD
   WD 7  281-321    -E-------NGIVIPHAHGD--EVVRDIF---IPAQH--SNM-LYSCGE----DGC------VKIWE
   WD 8  325-363    -G-------PLDIPENFWDY--SKKMNVL---GD--D--DRE-GSINLD----EPL------IIQKE

   WD40 Template    TG-------ECLRTLSGHTS--GVTSVSF---SP--D--GKR-LVSGSE----DGT------IKVWD