Input parameters:

  Query = YNL006W (Len=303)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YNL006W, Len=303):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVILVSAGYDHTIRFWEALTGVCSRTIQHSDSQVNRLEITNDKKLLATAGHQNVRLYDIRTTNPNPVASFEGHRGNVTS 80  
WD40-rpts                           (________________WD 1________________)     (_______________

Query       81 VSFQQDNRWMVTSSEDGTIKVWDVRSPSIPRNYKHNAPVNEVVIHPNQGELISCDRDGNIRIWDLGENQCTHQLTPEDDT 160 
WD40-rpts      __WD 2________________)  (_________________WD 3________________)   (____________

Query      161 SLQSLSMASDGSMLAAANTKGNCYVWEMPNHTDASHLKPVTKFRAHSTYITRILLSSDVKHLATCSADHTARVWSIDDDF 240 
WD40-rpts      _____WD 4_________________)         (_________________WD 5________________)(____

Query      241 KLETTLDGHQRWVWDCAFSADSAYLVTASSDHYVRLWDLSTREIVRQYGGHHKGAVCVALNDV 303 
WD40-rpts      _______________WD 6__________________)                         

6 WD40-repeats found in QUERY=YNL006W (Len=303):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    22-59       7.77  435.61  8.4e-05       25.0%     54.59
  WD 2:  Seg  7    65-103     10.37  542.98  3.0e-06       50.0%     55.20
  WD 3:  Seg 11   106-144      8.58  469.17  3.0e-05       27.5%     55.04
  WD 4:  Seg 15   148-187      8.10  449.31  5.5e-05       25.0%     56.48
  WD 5:  Seg 19   197-235      8.81  478.74  2.2e-05       27.5%     50.18
  WD 6:  Seg 23   236-278      9.34  500.43  1.1e-05       35.0%     55.12

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-59     -G---VCSRTIQHSDS-QVNRLEITNDKKLLATAG-HQNVRLYD
   WD 2   65-103    -P---NPVASFEGHRG-NVTSVSFQQDNRWMVTSSEDGTIKVWD
   WD 3  106-144    -S---PSIPRNYKHNA-PVNEVVIHPNQGELISCDRDGNIRIWD
   WD 4  148-187    -N---QCTHQLTPEDDTSLQSLSMASDGSMLAAANTKGNCYVWE
   WD 5  197-235    -L---KPVTKFRAHST-YITRILLSSDVKHLATCSADHTARVWS
   WD 6  236-278    IDDDFKLETTLDGHQR-WVWDCAFSADSAYLVTASSDHYVRLWD

   WD40 Template    TG---ECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD