Input parameters:

  Query = YMR102C (Len=834)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR102C, Len=834):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNMAEDKTSISKVHSEFSNSSNTTGSEEESRSHQESFDGESSSGESKSKSKLNLEYSADIEPLKFRMTKTNNTNDKLKY 80  
WD40-rpts                       (____________________WD 1____________________)                 

Query       81 SNNGNATDSFMRLKEHLQRGNTLNSNLRVNEFYPFNSIDTEQFENYLREPKYIKMLKRRKNLKQFRRLFLAQELMAYEGE 160 
WD40-rpts                                                 (_______________WD 2______________)  

Query      161 TVTSTSKSSEPTSKAIWSTKFSRDGKFMATGSKDGKIRIWKVIGSPVERAELDSSAESNKEARAKSMRIKQQVSSLNNPK 240 
WD40-rpts        (_________________WD 3________________)                     (________________W

Query      241 EKQFLDSATEKYEEKEKLLNLYAPVFHPTPLRLYKEHVQDVLDINWSKNNFILSASMDKTVKLWHPDRKNSLKTFIHPDF 320 
WD40-rpts      D 4________________)       (________________WD 5________________)  (____________

Query      321 VTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDLITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFH 400 
WD40-rpts      _____WD 6_________________)  (_________________WD 7_________________)           

Query      401 VADRQTQEQNAHVMVTETDSKIRHGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQ 480 
WD40-rpts                       (_________________WD 8_________________)   (___________________

Query      481 LSIWHGQPIVVNSSDDHWVYGWRLKSSDRENDQDEPKRKPKGLARSGSLRSIFSKSMSRSSSQNNEEKPHHHLKLTNLLP 560 
WD40-rpts      WD 9__________________)   (_________________WD10________________)          (____

Query      561 LPHHSNDHYIKNTDYISFHAHNAPVTCVSIAPPETSKTLSLSNDVICELSLEFFQTSDSFDVLSRSNDDGIMSDVESSLG 640 
WD40-rpts      _____________________WD11________________________)                              

Query      641 YNSKPGSISNASATSAIPDVVDAIGTILISTDNVGTIRVFRADMPSVIRKRVLLKLEEYNREVRRRFNSSDSLHSLSRSF 720 
WD40-rpts        (_________________WD12________________)                  (_________________WD1

Query      721 NSRAKSNLAGQPAAAYTNTGKGYATGRGYSNICPKSSTSLKTLGSNAQPRTPRESMSSIFSNAHGPTTPTSAMNLPIRCN 800 
WD40-rpts      3________________)(__________________WD14__________________)                    

Query      801 VCNGSRFEAFSGANDQQDRNYYCVDCGTVVNNFR 834 
WD40-rpts                                        

14 WD40-repeats found in QUERY=YMR102C (Len=834):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-63       4.28  291.31  0.00736       12.5%     -3.15
  WD 2:  Seg  3   124-158      5.19  328.85  0.00230        2.5%     34.65
  WD 3:  Seg  6   163-201      9.11  491.06  1.5e-05       30.0%     43.64
  WD 4:  Seg  9   223-260      5.48  341.01  0.00158       15.0%     40.08
  WD 5:  Seg 12   268-305      7.42  421.10  0.00013       27.5%     46.61
  WD 6:  Seg 16   308-347      6.81  396.05  0.00029       27.5%     53.49
  WD 7:  Seg 20   350-389      6.21  371.31  0.00062       22.5%     57.09
  WD 8:  Seg 26   418-457      7.35  418.28  0.00014       27.5%     46.17
  WD 9:  Seg 30   461-503      7.11  408.51  0.00019       25.0%     53.18
  WD10:  Seg 34   507-545      7.01  404.38  0.00022        7.5%     28.23
  WD11:  Seg 37   556-610      5.42  338.67  0.00170       20.0%     47.29
  WD12:  Seg 42   643-681      3.69  266.94  0.01563       17.5%     18.07
  WD13:  Seg 44   700-738      3.60  263.23  0.01752       12.5%     34.31
  WD14:  Seg 47   739-780      4.46  298.98  0.00581       17.5%     13.61

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-63     FS---------------NSSNTTGSEEESRSHQE--SFD----GESSSG-ESKSKSKLNL--EYSADIEP
   WD 2  124-158    --------------------EN------YLREPK--YIK----MLKRRK-NLKQFRRLFL--AQELMAYE
   WD 3  163-201    -T---------------STSKS------SEPTSK--AIW----STKFSR-DGKFMATGSK--DGKIRIWK
   WD 4  223-260    -------------------RAK------SMRIKQ--QVS----SLNNPK-EKQFLDSATEKYEEKEKLLN
   WD 5  268-305    -P---------------TPLRL------YKEHVQ--DVL----DINWSK-NN-FILSASM--DKTVKLWH
   WD 6  308-347    -R---------------KNSLK------TFIHPD--FVT----CVEFHPTDDRFFISGCL--DHKCRLWS
   WD 7  350-389    -D---------------DEVSF------EYDCQD--LIT----SVTLSPEEGKYTIIGTF--NGYVHILM
   WD 8  418-457    TD---------------SKIRH------GPRVTG--LQA----FRSQLD-NSFRLVVTSN--DSRIRIFD
   WD 9  461-503    -R---------------KLLEV------LKGFHS--GSSQHKAQLSIWH-GQPIVVNSSD--DHWVYGWR
   WD10  507-545    -S---------------DREND------QDEPKR--KPK----GLARSG-SLRSIFSKSM--SRSSSQNN
   WD11  556-610    TNLLPLPHHSNDHYIKNTDYIS------FHAHNA--PVT----CVSIAP-PETSKTLSLS--NDVICELS
   WD12  643-681    -S---------------KPGSI------SNASAT--SAI----PDVVDA-IGTILISTDN--VGTIRVFR
   WD13  700-738    NR---------------E-VRR------RFNSSD--SLH----SLSRSF-NSRAKSNLAG--QPAAAYTN
   WD14  739-780    TG---------------KGYAT------GRGYSNICPKS----STSLKT-LGSNAQPRTP--RESMSSIF

   WD40 Template    TG---------------ECLRT------LSGHTS--GVT----SVSFSP-DGKRLVSGSE--DGTIKVWD