Input parameters:

  Query = YMR096W (Len=297)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR096W, Len=297):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTGEDFKIKSGLAQMLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAK 80  
WD40-rpts                      (_____________________________WD 1____________________________) 

Query       81 VRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAV 160 
WD40-rpts                                                                                      

Query      161 KHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFK 240 
WD40-rpts                                                                                      

Query      241 SSNPVRLATAVVEATTHFDNPSKLLEVSSDLGELMGGVSIESISHASNGVRLSEIGW 297 
WD40-rpts                                                               

1 WD40-repeats found in QUERY=YMR096W (Len=297):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-79       2.85  232.59  0.04472       22.5%     23.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-79     KGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGK--VCRMSDPKMIKDIMNSVSIPVMA

   WD40 Template    TGECLRTLSG----------HTSGVTSVSFSP-----DGKRLVSGSED----------GTIKVWD