Input parameters:

  Query = YMR092C (Len=615)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR092C, Len=615):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 80  
WD40-rpts            (__________________WD 1_________________)(_____________________WD 2_______

Query       81 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 160 
WD40-rpts      _____________)            (_________________WD 3_________________)   (__________

Query      161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 
WD40-rpts      _______WD 4_________________)      (_________________WD 5_________________)   (_

Query      241 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320 
WD40-rpts      _________________WD 6__________________)(____________________WD 7_______________

Query      321 LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI 400 
WD40-rpts      ____)   (_______________WD 8______________)(_______________WD 9_______________)(

Query      401 TKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS 480 
WD40-rpts      _______________WD10______________)  (_________________WD11_________________)(___

Query      481 FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFHTSKINAISWKPAEKGANEEEIEEDLVATGS 560 
WD40-rpts      ______________WD12_________________)(________________________WD13_______________

Query      561 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVLE 615 
WD40-rpts      ________)    (________________WD14________________)    

14 WD40-repeats found in QUERY=YMR092C (Len=615):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-47       6.10  366.84  0.00071       12.5%     36.97
  WD 2:  Seg  5    48-94       6.69  391.04  0.00033       42.5%     53.88
  WD 3:  Seg 10   107-146      5.39  337.18  0.00178       15.0%     51.29
  WD 4:  Seg 14   150-189      7.27  414.88  0.00016       20.0%     55.47
  WD 5:  Seg 18   196-235      7.14  409.78  0.00019       32.5%     49.70
  WD 6:  Seg 22   239-280      7.84  438.48  7.7e-05       30.0%     57.16
  WD 7:  Seg 26   281-325      5.36  335.88  0.00185       27.5%     51.95
  WD 8:  Seg 30   329-363      7.65  430.63  9.8e-05       42.5%     50.55
  WD 9:  Seg 34   364-399      5.28  332.80  0.00204       22.5%     38.85
  WD10:  Seg 37   400-434      3.55  261.12  0.01869       17.5%     34.52
  WD11:  Seg 40   437-476      5.98  361.82  0.00083       17.5%     27.11
  WD12:  Seg 44   477-516      8.12  450.07  5.3e-05       17.5%     56.75
  WD13:  Seg 48   517-569      6.18  369.87  0.00064       25.0%     58.06
  WD14:  Seg 52   574-611      6.93  401.11  0.00024       27.5%     52.16

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-47     KEI----I----PPQPS-TQ-RNFTTHLSYD---P--T-TN----------AIAYPCG--KSAFVRCLD
   WD 2   48-94     DGDSKVPP----VVQFT-GHGSSVVTTVKFS---PIKG-SQ----------YLCSGDE--SGK-VIVWG
   WD 3  107-146    --N----V----KSEFQ-VL-AGPISDISWD---F--E-GR----------RLCVVGEGRDNF-GVFIS
   WD 4  150-189    -GN----S----LGEVS-GH-SQRINACHLK---Q--S-RP---------MRSMTVGD--DGS-VVFYQ
   WD 5  196-235    -SA----S----DRTHH-KQ-GSFVRDVEFS---P--DSGE----------FVITVGS--DRK-ISCFD
   WD 6  239-280    -GE----F----LKYIE-DD-QEPVQGGIFALSWL--D-SQ----------KFATVGA--DAT-IRVWD
   WD 7  281-325    VTT----SKCVQKWTLD-KQ-QLGNQQVGVV---A--T-GN---------GRIISLSL--DGT-LNFYE
   WD 8  329-363    -DE----V----LKTIS-GH-NKGITALTVN---P-----------------LISGSY--DGR-IMEWS
   WD 9  364-399    -------S----SSMHQ-DH-SNLIVSLDNS---K----AQ----------EYSSISW--DDT-LKVNG
   WD10  400-434    -------------ITKH-EF-GSQPKVASAN---N--D-GF----------TAVLTND--DDL-LILQS
   WD11  437-476    -GD----I----IKSVRLNS-PGSAVSLSQN---Y--V-AV----------GLEEGNT--IQV-FKLSD
   WD12  477-516    LEV----S----FDLKT-PL-RAKPSYISIS---P--S-ET----------YIAAGDV--MGK-ILLYD
   WD13  517-569    LQS-REVK----TSRWA-FH-TSKINAISWK---P--A-EKGANEEEIEEDLVATGSL--DTN-IFIYS
   WD14  574-611    -MK----I----IKALN-AH-KDGVNNLLWE---T--P-ST-----------LVSSGA--DAC-IKRWN

   WD40 Template    TGE----C----LRTLS-GH-TSGVTSVSFS---P--D-GK----------RLVSGSE--DGT-IKVWD