Input parameters:

  Query = YMR029C (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YMR029C, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAINQAHVHPHYTLPGVMHYLQTEFTKNERDRITWELERSEMKARIAELEGENRDLKHQLNQIQSKAVSPEGEKEEKHVP 80  
WD40-rpts                                                                                      

Query       81 DSLLQSKLAVQENVKEIIYLLKGPNTVNQLESLNSREAGSELHDLEKLNVNTPKEEGSAKTNGMDILNNALLDTKPNPKQ 160 
WD40-rpts                                                                                      

Query      161 GPSESPSPTKVKSLFSTANKRENNETISKIHSELSKVDIISSYGDCMALYDADTKSLEIHQVDANLNSKLLKKISLGQDS 240 
WD40-rpts                                                                                      

Query      241 DIMKFFWVSTSKLLVIEKSFHLKLFSISSASLISDVDLLQDSEQPFSSSDIINIDFKNKWLLIASKNKSQIRIWELDNIE 320 
WD40-rpts                                                                                      

Query      321 APEDVPINIKETYEITHDNDDDDSNDSTNILDCILGITEKSLILLSSNPYQLTIYDFEGKLLQKIDLKIDTILSGKPEEE 400 
WD40-rpts                                                                                      

Query      401 GYHLFLDRKTSKLLIQLSNERLLVYSFDKKKVVLKEQLTPSSTLPIQLDLNDSIITVSYSNGDFEFRNLENLKPSIDEFV 480 
WD40-rpts                                   (_________________WD 1________________)            

Query      481 VADINFSERKEPVVFSSNLIVDSTPVLITVNKNNEVLLHKIKI 523 
WD40-rpts                                                 

1 WD40-repeats found in QUERY=YMR029C (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17   430-468      4.23  289.36  0.00782        5.0%     43.67

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  430-468    KKVVLKEQLTPSSTLPIQLDLNDSIITVSYSNGDFEFRN

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD