Input parameters:

  Query = YML133C (Len=1374)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YML133C, Len=1374):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVSDRRKFEKANFDEFESALNNKNDLVHCPSITLFESIPTEVRSFYEDEKSGLIKVVKFRTGAMDRKRSFEKIVVSVMV 80  
WD40-rpts                                                                                      

Query       81 GKNVQKFLTFVEDEPDFQGGPIPSKYLIPKKINLMVYTLFQVHTLKFNRKDYDTLSLFYLNRGYYNELSFRVLERCHEIA 160 
WD40-rpts                                                                                      

Query      161 SARPNDSSTMRTFTDFVSGAPIVRSLQKSTIRRYGYNLAPHMFLLLHVDELSIFSAYQASLPGEKKVDTERLKRDLCPRK 240 
WD40-rpts                                                                                      

Query      241 PIEIKYFSQICNDMMNKKDRLGDVLATAQRIRRRYNKNSSSEPRLKTLDGLTSERWIQWLGLESDYHCSFSSTRNAEDVV 320 
WD40-rpts                                                                                      

Query      321 AGEAASSDHHQKISRVTRKRPREPKSTNDILVAGQKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHL 400 
WD40-rpts                                                                                     (

Query      401 PLIALASKGDVKYVSFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRIAAWENI 480 
WD40-rpts      _____________________________WD 1_____________________________)                 

Query      481 VECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTAPEAVADAALQRIGLTGLAKKSMDINE 560 
WD40-rpts                                                                                      

Query      561 LKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGHVHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSW 640 
WD40-rpts                           (_______________________________WD 2_______________________

Query      641 RKYFRVVWIHGKLGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRDGGLCYLL 720 
WD40-rpts      ________)                                                                       

Query      721 SRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTDLSADTVELIERMDRLAEKQATASMSIVA 800 
WD40-rpts                                                                                      

Query      801 LPSSFQESNSSDRCRKYCSSDEDSDTCIHGSANASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSST 880 
WD40-rpts                                                                                      

Query      881 NATTTASTNVRTSATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSSTNATTTAST 960 
WD40-rpts                                                                                      

Query      961 NSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLLERKKLKAQFPNTSENMNVLQFLGFRSDE 1040
WD40-rpts                                                                                      

Query     1041 IKHLFLYGIDIYFCPEGVFTQYGLCKGCQKMFELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPV 1120
WD40-rpts                                                                                      

Query     1121 GYLKFFSVKRGEIYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKTEVLQYFLN 1200
WD40-rpts                                                                                      

Query     1201 WDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRHHRQLRSRYELSLGMHLRDQLALGVTPSK 1280
WD40-rpts                                                                                      

Query     1281 VPHWTAFLSMLIGLFYNKTFRQKLEYLLEQISEVWLLPHWVDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFD 1360
WD40-rpts                                                                                      

Query     1361 IILLCRDSSREVGE 1374
WD40-rpts                    

2 WD40-repeats found in QUERY=YML133C (Len=1374):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   400-463      3.46  257.75  0.02073       17.5%     24.90
  WD 2:  Seg 14   582-649      2.83  231.74  0.04590       22.5%     28.30

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  400-463    LPLIALASKGDVKYVSFLFVPYTVLLANCMIRLSRC----------------GCLNVAPVRNFIEEGCDGVT------------DLYVGIYD
   WD 2  582-649    IKEKSEVPLGHVHKIWKKVES-------------QPEEALKLLLALFEIEPESKAIVV-----------ASTTNEVEELACSWRKYFRVVWI

   WD40 Template    TGECLRTLSGHTSGVTSVSFS-------------PD----------------GKRLVS-----------GSE------------DGTIKVWD