Input parameters:

  Query = YML102W (Len=468)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YML102W, Len=468):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEASHLQIYWHDSQPVYSLTFQKNSANDKLFTAGGDNKVRIWKLNRDENGQNGGVRKIESLDFLGSLTHHEQAINVIRFN 80  
WD40-rpts       (__________________WD 1__________________)                 (_________________WD

Query       81 SKGDVLASAGDDGQVLLWKQEDPNTQQESVVRPFGMDAETSEADENKEKWVVWKRLRGGSGATAAAEIYDLAWSPDNRNI 160 
WD40-rpts       2________________)(_____________WD 3_____________)   (_________________WD 4____

Query      161 VVACMDNSIRLFDVGAGMLVCGQSDHGHYVQGVAWDPLNQFILSQSADRSLHVYGVILSSAGVVTGLKLRSKIAKAELPC 240 
WD40-rpts      ____________)   (_________________WD 5________________)(________________WD 6____

Query      241 PGDVLRTNYLFHNETLPSFFRRCSISPCGGLVVIPSGVYKVAGDEVANCVYVYTRSGILNSAGGVKNRPAIRIPSLKKPA 320 
WD40-rpts      ___________)                                                      (_____________

Query      321 LMAAFSPVFYETCQKSVLKLPYKLVFAIATTNEVLVYDTDVLEPLCVVGNIHYSPITDLAWSEDGSTLLISSTDGFCSYV 400 
WD40-rpts      __________WD 7_______________________)(___________________WD 8__________________

Query      401 SIDTETQFGSRIEPPAMHAEPLDTDESAVAAKNQREAGGIVNMLPVKKIPCNSSDSKKRRIHPTPVDL 468 
WD40-rpts      )                                                                   

8 WD40-repeats found in QUERY=YML102W (Len=468):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-43       7.69  432.25  9.3e-05       17.5%     54.03
  WD 2:  Seg  5    61-99       8.20  453.51  4.8e-05       25.0%     51.01
  WD 3:  Seg  9   100-131      4.87  315.98  0.00343       10.0%     41.29
  WD 4:  Seg 12   135-173      8.63  471.00  2.8e-05       17.5%     53.51
  WD 5:  Seg 16   177-215      8.81  478.74  2.2e-05       25.0%     53.02
  WD 6:  Seg 20   216-252      5.65  347.92  0.00127       12.5%      9.00
  WD 7:  Seg 27   307-358      5.68  349.16  0.00123       15.0%     50.60
  WD 8:  Seg 31   359-401      7.60  428.59  0.00010       27.5%     58.53

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-43     EA---SHLQIYWHDSQPVYSLTFQK-------------NSANDKLFTAGGDNKVRIWK
   WD 2   61-99     -L---DFLGSLTHHEQAINVIRFNS-------------KGD--VLASAGDDGQVLLWK
   WD 3  100-131    -----------QEDPNTQQESVVRP-------------FGM--DAETSEADENKEKWV
   WD 4  135-173    -R---LRGGSGATAAAEIYDLAWSP-------------DNR--NIVVACMDNSIRLFD
   WD 5  177-215    -G---MLVCGQSDHGHYVQGVAWDP-------------LNQ--FILSQSADRSLHVYG
   WD 6  216-252    ------VILSSAGVVTGLKLRSKIA-------------KAE--LPCPGDVLRTNYLFH
   WD 7  307-358    -N---RPAIRIPSLKKPALMAAFSPVFYETCQKSVLKLPYK--LVFAIATTNEVLVYD
   WD 8  359-401    TDVLEPLCVVGNIHYSPITDLAWSE-------------DGS--TLLISSTDGFCSYVS

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSP-------------DGK--RLVSGSEDGTIKVWD