Input parameters:

  Query = YML088W (Len=668)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (YML088W, Len=668):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MERPGLVLQDLPPEILINIFSHLDEKDLFTLQELSTHFRNLIHDEELWKNLFKSRVHTTHFPTFSQSSKFSVEYIERTRG 80  
WD40-rpts                                                                                      

Query       81 LHHWQHNKAIRTKYTIIPTRNWDQPSIERIVFDYPRVAAYNDGTITILQLQNHKRQKKFKKLIYIPCTTPQGCSTMDFNI 160 
WD40-rpts                                                                                      

Query      161 NAAVFGRFDGRVFGKLLSNKSYLTPVMEFTGRHSAGVTAICNSESWDTSREDWSVSGSENGEIIWWCENKLVKMWKVSNR 240 
WD40-rpts                        (______________________WD 1_____________________)             

Query      241 VIWKLAFFKDWTLIMDDEKLYIIHQMQELHSIDIPKDLDEQPMRVRFFKMDFGSMTLVLADLNNVYTISVNPNGNFGNLR 320 
WD40-rpts                                                                                      

Query      321 KLEMPEQICAVEIDEKTSQREQNWQFAGDDGCYISLLTTQNTLYIINIRDLSSSGLKVQCKISFDEQVYVSQVTNLIVVV 400 
WD40-rpts        (____________________WD 2___________________)                                 

Query      401 ALPNVLQILNAMTGELIKTVLKTEKFPEFLKVSQDKIIMGSGNVLNYLKFVSSDSKKHHHSTKGKNTVSNKWNETLNTEL 480 
WD40-rpts                                                                                      

Query      481 QYYDEDEDLRRKRQSEISRLIDAYGGDLELSGDTDEENDIQLRIALLESQEAQARNQAEAGEPVGDDEDEQLRRALEESQ 560 
WD40-rpts                                                                                      

Query      561 LIYETQTNSSANHGNNTNDEIDEDDEEFLRAIRQSRVEDERRRHLRNHTTGRRNGPLSDDNFATYGAAESSERTSTENTI 640 
WD40-rpts                                                                                      

Query      641 GSSVGVDASNNVDEDLQLAIALSLSEIN 668 
WD40-rpts                                  

2 WD40-repeats found in QUERY=YML088W (Len=668):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   179-227      5.77  353.03  0.00109       32.5%     44.07
  WD 2:  Seg 22   323-367      3.66  265.69  0.01624        7.5%     31.03

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  179-227    NKSYLTPVMEFTGRHSA-----GVTAICNSESWDTSREDWSVSGSENGEIIWWC
   WD 2  323-367    EMP----EQICAVEIDEKTSQREQNWQFAGD-----DGCYISLLTTQNTLYIIN

   WD40 Template    TGE----CLRTLSGHTS-----GVTSVSFSP-----DGKRLVSGSEDGTIKVWD